CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g13880

Gene name ELM2 domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.42 53.9 At1g13880 837947 ELM2 domain-containing protein F:DNA binding;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.33 38.1 At1g06410 837152 ATTPS7 Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. S.X. H.G.
0.20 14.4 At2g21120 816647 unknown protein F:unknown;P:biological_process unknown;C:unknown;MFPBO S.X. H.G.
0.10 3.4 At3g48760 824037 zinc finger (DHHC type) family protein F:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFP S.X. H.G.
0.08 2.3 At5g03520 831817 ATRAB8C F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.8 99.6 E-MEXP-807-raw-cel-1173273170
20.9 99.6 E-MEXP-300-raw-cel-460515037
20.2 99.6 E-MEXP-300-raw-cel-460515401
19.2 99.6 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
18.3 99.5 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
17.1 99.5 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
16.2 99.5 E-MEXP-807-raw-cel-1173272948
15.7 99.5 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
15.7 99.5 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.6 99.5 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 2e-13 77 At2g03470 814876 myb family transcription factor / ELM2 domain-containing protein F:DNA binding;P:unknown;C:nucleus;OMFBPVA C.G. S.X.
0.02 1e-2 42 At1g26580 839198 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.02 2e-1 38 At5g11270 830997 OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3) Encodes a homeodomain transcription factor involved in mediating resistance to infection by necrotrophic pathogens dependent on perception of jasmonic acid through COI1. Expressed in the nucleus. Downregulated upon fungal infection. Also involved in drought tolerance. C.G. S.X.
0.01 2e-1 38 At2g17210 816226 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:N-terminal protein myristoylation;C:unknown;POMFB C.G. S.X.
0.01 2e-1 38 At1g55440 841991 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;BMPOFVA C.G. S.X.
0.01 2e-1 38 At1g17680 838344 transcription factor-related F:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.02 2e-1 38 At1g28080 839701 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max GmaAffx.74591.1.S1_at BU764079 cysteine proteinase inhibitor - 3e-7 At3g12490 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.02 5e+0 32 Hordeum vulgare HA10K08u_x_at HA10K08u - - 4e+0 At1g15830 unknown protein C.G. S.X.
0.02 1e+0 36 Oryza sativa OsAffx.15476.1.S1_at - - - 0 C.G. S.X.
0.04 9e-1 36 Populus trichocarpa PtpAffx.213983.1.S1_at pmrna27247 hypothetical protein - 7e-1 At1g13880 ELM2 domain-containing protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.4942.1.A1_at BJ274279 - - 5e+0 At3g19085 - C.G. S.X.
0.03 3e+0 32 Vitis vinifera 1616783_at CF405837 hypothetical protein LOC100267386 - 9e-11 At1g23800 ALDH2B7 C.G. S.X.
0.02 4e+0 32 Zea mays Zm.2895.8.S1_a_at AI677411 - - 8e-41 At4g14320 60S ribosomal protein L36a/L44 (RPL36aB) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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