CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g13830

Gene name beta-1,3-glucanase-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g13830 837944 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBMOFVA S.X. H.G.
0.86 93.1 At5g48290 834882 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF S.X. H.G.
0.53 68.6 At4g21230 827872 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.44 57.2 At4g15500 827222 UGT84A4 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. S.X. H.G.
0.22 17.5 At3g58710 825040 WRKY69 member of WRKY Transcription Factor; Group II-e S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
138.7 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
103.6 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
70.3 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
57.3 99.8 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
53.5 99.8 GSM142752 MJ001_ATH1_A3-jones-rh1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
50.3 99.8 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
50.1 99.8 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
47.7 99.8 GSM142753 MJ001_ATH1_A4-jones-rh2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
42.2 99.8 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.9 99.8 GSM142755 MJ001_ATH1_A6-jones-RH-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.34 2e-24 113 At2g03505 814879 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO C.G. S.X.
0.06 5e-3 42 At1g26450 839186 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVA C.G. S.X.
0.01 1e+0 34 At5g58620 835976 zinc finger (CCCH-type) family protein F:transcription factor activity;P:regulation of transcription;C:endomembrane system;MOPFBVA C.G. S.X.
0.02 1e+0 34 At3g26680 822280 SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage. C.G. S.X.
0.02 1e+0 34 At3g48800 824041 sterile alpha motif (SAM) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBO C.G. S.X.
0.03 1e+0 34 At1g48590 841280 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO C.G. S.X.
0.01 1e+0 34 At1g10300 837569 GTP-binding protein-related F:GTP binding;P:unknown;C:unknown;BOMFAPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-1 36 Glycine max GmaAffx.86183.1.S1_at BM178386 - - 3e-1 At4g12382 - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare S0001000058B11F1_at S0001000058B11F1 - - 2e-1 At2g24590 splicing factor, putative C.G. S.X.
0.04 2e+0 34 Oryza sativa Os.19067.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.9707.1.S1_at AJ768279 - - 6e+0 At5g17795 unknown protein C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.55539.1.S1_s_at CA664717 - - 2e+0 At1g13830 beta-1,3-glucanase-related C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1608994_s_at CF214108 hypothetical protein LOC100266093 - 4e-1 At1g57906 - C.G. S.X.
0.03 8e+0 30 Zea mays Zm.6350.1.A1_at AI714781 - - 4e+0 At5g15800 SEP1 (SEPALLATA1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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