CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g13300

Gene name myb family transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.70 83.5 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF S.X. H.G.
0.73 85.5 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.72 84.8 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA S.X. H.G.
0.67 81.6 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.67 81.6 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO S.X. H.G.
0.61 76.7 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
0.60 75.7 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA S.X. H.G.
0.59 74.7 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. S.X. H.G.
0.57 73.8 At5g40510 834049 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA S.X. H.G.
0.51 66.3 At3g45410 823679 lectin protein kinase family protein encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
73.3 99.9 GSM157324 Hammond_3-17_Potassium-starved-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
68.9 99.9 GSM157326 Hammond_3-10_Control-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
58.2 99.8 GSM157327 Hammond_3-11_Potassium-starved-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
55.4 99.8 GSM157323 Hammond_3-16_Control-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
44.1 99.8 GSM133893 Schroeder_1-9_JS46-starve-48h_Rep1_ATH1 GSE5744 Response to potassium starvation in roots
44.0 99.8 E-MEXP-828-raw-cel-1156922455
43.5 99.8 E-MEXP-828-raw-cel-1156922533
43.1 99.8 E-MEXP-828-raw-cel-1156922485
41.9 99.8 GSM133891 Schroeder_1-3_JS45-control-48h_Rep1_ATH1 GSE5744 Response to potassium starvation in roots
40.3 99.8 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.40 4e-48 192 At3g25790 822170 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM C.G. S.X.
0.13 3e-27 123 At1g68670 843197 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM C.G. S.X.
0.18 3e-24 113 At1g25550 839142 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM C.G. S.X.
0.07 6e-16 85 At4g37180 829872 myb family transcription factor myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen C.G. S.X.
0.02 9e-6 52 At4g28610 828979 PHR1 (PHOSPHATE STARVATION RESPONSE 1) Similar to phosphate starvation response gene from Chlamydomonas. Weakly responsive to phosphate starvation. Acts upstream of PHO2 in phosphate signaling. C.G. S.X.
0.03 9e-6 52 At2g03500 814878 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;OFPMBAV C.G. S.X.
0.07 9e-6 52 At1g49560 841380 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO C.G. S.X.
0.02 2e-3 44 At5g67350 836870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 5e-14 79 Glycine max GmaAffx.70843.1.S1_at BM188078 - - 2e-5 At1g25550 myb family transcription factor C.G. S.X.
0.08 2e-14 79 Hordeum vulgare Contig14220_at Contig14220 - - 2e-6 At2g03500 myb family transcription factor C.G. S.X.
0.04 5e-12 73 Oryza sativa Os03g0764600 AK105625.1 - - 4e-9 At1g68670 myb family transcription factor C.G. S.X.
0.17 5e-14 79 Populus trichocarpa PtpAffx.208000.1.S1_at pmrna15878 hypothetical protein - 9e-15 At1g25550 myb family transcription factor C.G. S.X.
0.08 1e-4 48 Triticum aestivum TaAffx.28317.1.S1_at CA661906 - - 7e-5 At1g13300 myb family transcription factor C.G. S.X.
0.04 6e-4 44 Vitis vinifera 1620914_at BQ798443 hypothetical protein LOC100267475 - 2e-3 At1g25550 myb family transcription factor C.G. S.X.
0.03 4e+0 32 Zea mays ZmAffx.335.1.A1_at AI670522 - - 7e-2 At3g13130 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0016036 A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate.
X GO:0080022 The process whose specific outcome is the progression of the primary root over time, from its formation to the mature structure. The primary root develops directly from the embryonic radicle.
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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