CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g13250

Gene name GATL3 (Galacturonosyltransferase-like 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At1g13250 837885 GATL3 (Galacturonosyltransferase-like 3) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.53 68.6 At1g79720 844311 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PFMOB S.X. H.G.
0.50 65.3 At5g42100 834215 ATBG_PAP encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd S.X. H.G.
0.36 43.6 At3g08600 820007 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PB S.X. H.G.
0.33 38.1 At3g17350 820998 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.25 22.6 At2g27810 817328 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.0 99.4 E-MEXP-265-raw-cel-414617783
11.0 99.2 E-MEXP-1246-raw-cel-1504120201
10.6 99.2 E-MEXP-265-raw-cel-414617890
10.2 99.2 E-MEXP-1246-raw-cel-1504120171
9.5 99.1 E-MEXP-1304-raw-cel-1530618033
8.9 99.0 E-MEXP-265-raw-cel-414617695
8.8 99.0 E-MEXP-1246-raw-cel-1504120291
8.8 99.0 E-MEXP-1246-raw-cel-1504120261
8.3 99.0 E-MEXP-1246-raw-cel-1504120321
8.3 99.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 1e-17 91 At3g50760 824240 GATL2 (Galacturonosyltransferase-like 2) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.17 1e-17 91 At1g19300 838512 PARVUS (PARVUS) The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls. C.G. S.X.
0.12 2e-10 67 At4g02130 827438 GATL6 Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.13 2e-10 67 At1g02720 839475 GATL5 (GALACTURONOSYLTRANSFERASE 5) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.16 6e-10 65 At1g70090 843345 LGT8 (GLUCOSYL TRANSFERASE FAMILY 8) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 5e-5 50 Glycine max GmaAffx.65651.1.S1_at CA819824 - - 5e-10 At1g70090 LGT8 (GLUCOSYL TRANSFERASE FAMILY 8) C.G. S.X.
0.03 1e+0 34 Hordeum vulgare baal1j07_at baal1j07 - - 5e-15 At4g30800 40S ribosomal protein S11 (RPS11B) C.G. S.X.
0.08 7e-5 50 Oryza sativa Os03g0359600 AK072250.1 - Avr9/Cf-9 rapidly elicited protein 231 6e-5 At1g13250 GATL3 (Galacturonosyltransferase-like 3) C.G. S.X.
0.38 1e-24 115 Populus trichocarpa PtpAffx.207996.1.S1_at pmrna15870 glycosyltransferase, CAZy family GT8 - 6e-25 At1g13250 GATL3 (Galacturonosyltransferase-like 3) C.G. S.X.
0.08 2e-3 44 Triticum aestivum TaAffx.12563.1.A1_at BJ254471 - - 1e-3 At1g13250 GATL3 (Galacturonosyltransferase-like 3) C.G. S.X.
0.04 6e-1 34 Vitis vinifera 1615986_at CF214784 hypothetical protein LOC100265777 - 1e+0 At1g13250 GATL3 (Galacturonosyltransferase-like 3) C.G. S.X.
0.02 4e+0 32 Zea mays Zm.16365.1.S1_at CF625542 hypothetical protein LOC100278838 - 5e+0 At3g44440 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage