CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g13160

Gene name SDA1 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At1g13160 837874 SDA1 family protein F:binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVA S.X. H.G.
0.89 94.6 At2g18220 816337 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.67 81.6 At1g06720 837182 - F:unknown;P:ribosome biogenesis;C:nucleus;OMFBPVA S.X. H.G.
0.50 65.3 At5g06110 830498 DNAJ heat shock N-terminal domain-containing protein / cell division protein-related F:heat shock protein binding, DNA binding;P:protein folding;C:unknown;MOBFPVA S.X. H.G.
0.48 62.5 At5g67240 836859 SDN3 (SMALL RNA DEGRADING NUCLEASE 3) F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBA S.X. H.G.
0.36 43.6 At3g05060 819668 SAR DNA-binding protein, putative SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.7 99.8 E-MEXP-849-raw-cel-1181981030
38.7 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.9 99.7 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
33.2 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.2 99.7 E-MEXP-849-raw-cel-1181981006
33.1 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.3 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.2 99.7 E-MEXP-849-raw-cel-1181981014
30.1 99.7 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
29.3 99.7 GSM133977 Birnbaum_1-7_StageI-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 4e-164 579 At4g31520 829279 SDA1 family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 8e-2 40 At5g13380 831179 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF C.G. S.X.
0.01 8e-2 40 At4g32610 829396 unknown protein F:unknown;P:unknown;C:mitochondrial matrix;MOFBPVA C.G. S.X.
0.01 8e-2 40 At1g24090 839020 RNase H domain-containing protein F:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:unknown;PBOAM C.G. S.X.
0.01 3e-1 38 At5g10950 830962 cylicin-related F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA C.G. S.X.
0.01 3e-1 38 At1g64390 842747 AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2) F:carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.02 1e+0 36 At5g15140 831366 aldose 1-epimerase family protein F:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA C.G. S.X.
0.01 1e+0 36 At5g48020 834853 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-1 40 Glycine max Gma.15426.3.S1_at BQ081124 - - 5e-3 At4g37210 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.01 1e-1 38 Hordeum vulgare Contig3899_at Contig3899 - - 6e-10 At3g13200 EMB2769 (EMBRYO DEFECTIVE 2769) C.G. S.X.
0.03 6e-1 38 Oryza sativa Os04g0630000 AK060199.1 - SDA1 domain containing protein 7e-8 At4g31520 SDA1 family protein C.G. S.X.
0.09 3e-5 52 Populus trichocarpa PtpAffx.208269.1.S1_at pmrna16456 hypothetical protein - 2e-5 At4g31520 SDA1 family protein C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.42484.1.S1_at AJ614871 - - 5e-3 At1g47820 unknown protein C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1614309_at CF212710 hypothetical protein LOC100252440 - 3e-5 At4g31520 SDA1 family protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.7551.1.A1_at BM379939 peptidyl-prolyl cis-trans isomerase - 3e-1 At3g56070 ROC2 (ROTAMASE CYCLOPHILIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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