CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g13100

Gene name CYP71B29

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g13100 837867 CYP71B29 putative cytochrome P450 S.X. H.G.
0.57 73.8 At3g61430 825316 PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. S.X. H.G.
0.47 61.2 At5g07220 830613 ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. S.X. H.G.
0.42 53.9 At4g20260 827773 DREPP plasma membrane polypeptide family protein Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels. S.X. H.G.
0.40 50.8 At3g03000 821161 calmodulin, putative Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner S.X. H.G.
0.39 48.4 At5g40890 834090 ATCLC-A (CHLORIDE CHANNEL A) Encodes a member of the voltage-dependent chloride channel. Also functions as a NO3-/H+ exchanger that serves to accumulate nitrate nutrient in vacuoles. Mutants homozygous for the T-DNA insertion mutation have reduced nitrate uptake capacity in high nitrate environment and exhibit hypersensitivity to chlorate. S.X. H.G.
0.38 46.7 At4g40080 830171 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, binding;P:biological_process unknown;C:chloroplast;PMO S.X. H.G.
0.37 45.0 At1g32410 840134 vacuolar protein sorting 55 family protein / VPS55 family protein F:transporter activity;P:transport;C:vacuole;MFPO S.X. H.G.
0.36 43.6 At5g19860 832107 unknown protein F:unknown;P:biological_process unknown;C:vacuole;PO S.X. H.G.
0.36 43.6 At1g59580 842248 ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) encodes a mitogen-activated kinase involved in innate immunity S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
279.5 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
91.9 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
83.8 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
83.6 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
81.3 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.9 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
74.1 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
67.4 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
66.0 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
64.6 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 9e-164 577 At1g13090 837866 CYP71B28 putative cytochrome P450 C.G. S.X.
0.60 3e-123 442 At1g13110 837868 CYP71B7 member of CYP71B C.G. S.X.
0.65 2e-69 264 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. C.G. S.X.
0.39 4e-27 123 At3g26210 822222 CYP71B23 putative cytochrome P450 C.G. S.X.
0.09 2e-10 67 At3g53290 824496 CYP71B30P missing N-term 80 AA not found between end of 71B5 and start of this sequence probably a pseudogene, from http://drnelson.utmem.edu/biblioD.html C.G. S.X.
0.13 8e-10 65 At3g26230 822224 CYP71B24 putative cytochrome P450 C.G. S.X.
0.14 3e-9 63 At3g53300 824497 CYP71B31 putative cytochrome P450 C.G. S.X.
0.18 3e-9 63 At3g26280 822231 CYP71B4 cytochrome P450 monooxygenase C.G. S.X.
0.19 1e-8 61 At3g26270 822230 CYP71B25 putative cytochrome P450 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 42 Glycine max GmaAffx.60645.1.S1_at BI701603 - - 2e-4 At3g53300 CYP71B31 C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig14789_at Contig14789 - - 1e-3 At3g23220 DNA binding / transcription factor C.G. S.X.
0.01 6e+0 34 Oryza sativa Os06g0688100 AK063450.1 - Hypothetical protein 5e-5 At2g34750 RNA polymerase I specific transcription initiation factor RRN3 family protein C.G. S.X.
0.03 7e-2 40 Populus trichocarpa Ptp.2726.1.S1_at DN492953 cytochrome P450 - 2e-3 At3g03470 CYP89A9 C.G. S.X.
0.03 5e-2 40 Triticum aestivum Ta.13971.1.A1_at BQ752989 - - 3e-1 At1g13080 CYP71B2 (CYTOCHROME P450 71B2) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1613695_at CA815439 hypothetical LOC100241660 - 1e-3 At1g11610 CYP71A18 C.G. S.X.
0.02 8e-2 38 Zea mays ZmAffx.537.1.A1_at AI711809 - - 3e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00903 Limonene and pinene degradation
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
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