Gene omics information

Query gene ID At1g13100
Gene name CYP71B29
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g13100837867CYP71B29putative cytochrome P450S.X.H.G.
0.5773.8At3g61430825316PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.S.X.H.G.
0.4761.2At5g07220830613ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3)A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.S.X.H.G.
0.4253.9At4g20260827773DREPP plasma membrane polypeptide family proteinEncodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels.S.X.H.G.
0.4050.8At3g03000821161calmodulin, putativeCalmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent mannerS.X.H.G.
0.3948.4At5g40890834090ATCLC-A (CHLORIDE CHANNEL A)Encodes a member of the voltage-dependent chloride channel. Also functions as a NO3-/H+ exchanger that serves to accumulate nitrate nutrient in vacuoles. Mutants homozygous for the T-DNA insertion mutation have reduced nitrate uptake capacity in high nitrate environment and exhibit hypersensitivity to chlorate.S.X.H.G.
0.3846.7At4g40080830171epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, binding;P:biological_process unknown;C:chloroplast;PMOS.X.H.G.
0.3745.0At1g32410840134vacuolar protein sorting 55 family protein / VPS55 family proteinF:transporter activity;P:transport;C:vacuole;MFPOS.X.H.G.
0.3643.6At5g19860832107unknown proteinF:unknown;P:biological_process unknown;C:vacuole;POS.X.H.G.
0.3643.6At1g59580842248ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2)encodes a mitogen-activated kinase involved in innate immunityS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
279.5100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
91.999.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
79.999.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
66.099.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.809e-164577At1g13090837866CYP71B28putative cytochrome P450C.G.S.X.
0.603e-123442At1g13110837868CYP71B7member of CYP71BC.G.S.X.
0.652e-69264At3g26830822298PAD3 (PHYTOALEXIN DEFICIENT 3)Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.C.G.S.X.
0.394e-27123At3g26210822222CYP71B23putative cytochrome P450C.G.S.X.
0.092e-1067At3g53290824496CYP71B30Pmissing N-term 80 AA not found between end of 71B5 and start of this sequence probably a pseudogene, from
0.138e-1065At3g26230822224CYP71B24putative cytochrome P450C.G.S.X.
0.143e-963At3g53300824497CYP71B31putative cytochrome P450C.G.S.X.
0.183e-963At3g26280822231CYP71B4cytochrome P450 monooxygenaseC.G.S.X.
0.191e-861At3g26270822230CYP71B25putative cytochrome P450C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-242Glycine maxGmaAffx.60645.1.S1_atBI701603--2e-4At3g53300CYP71B31C.G.S.X.
0.021e+034Hordeum vulgareContig14789_atContig14789--1e-3At3g23220DNA binding / transcription factorC.G.S.X.
0.016e+034Oryza sativaOs06g0688100AK063450.1-Hypothetical protein5e-5At2g34750RNA polymerase I specific transcription initiation factor RRN3 family proteinC.G.S.X.
0.037e-240Populus trichocarpaPtp.2726.1.S1_atDN492953cytochrome P450-2e-3At3g03470CYP89A9C.G.S.X.
0.035e-240Triticum aestivumTa.13971.1.A1_atBQ752989--3e-1At1g13080CYP71B2 (CYTOCHROME P450 71B2)C.G.S.X.
0.032e-136Vitis vinifera1613695_atCA815439hypothetical LOC100241660-1e-3At1g11610CYP71A18C.G.S.X.
0.028e-238Zea maysZmAffx.537.1.A1_atAI711809--3e+0At5g47610zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00347Link to KaPPA-View 4Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00903Link to KEGG PATHWAYLimonene and pinene degradation
00945Link to KEGG PATHWAYStilbenoid, diarylheptanoid and gingerol biosynthesis
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