Gene omics information

Query gene ID At1g13090
Gene name CYP71B28
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8994.6At1g13090837866CYP71B28putative cytochrome P450S.X.H.G.
0.4253.9At4g11960826803PGRL1B (PGR5-Like B)Encodes PGRL1B, a transmembrane protein present in thylakoids. PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).S.X.H.G.
0.3948.4At4g27800828893protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:nucleolus, nucleus, chloroplast, protein serine/threonine phosphatase complex, cytoplasm;PMOFBVAS.X.H.G.
0.3032.1At4g27990828912YGGT family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BOPS.X.H.G.
0.2930.3At3g03890821082FMN bindingF:FMN binding;P:unknown;C:chloroplast;BOPMS.X.H.G.
0.2726.2At5g44000834423glutathione S-transferase C-terminal domain-containing proteinF:glutathione transferase activity;P:unknown;C:chloroplast;BOFPMAS.X.H.G.
0.2217.5At4g17370827449oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAPS.X.H.G.
0.2217.5At5g05200830402ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAVS.X.H.G.
0.2115.8At1g49970841420CLPR1Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).S.X.H.G.
0.1811.4At2g01620814691MEE11 (maternal effect embryo arrest 11)F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MPOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
29.099.7GSM133737Buchanan-Wollaston_A-9-bwoll-Co1_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
27.299.7GSM133738Buchanan-Wollaston_A-10-bwoll-Co2_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
19.799.6GSM133735Buchanan-Wollaston_A-7-bwoll-Ei1_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
18.499.5GSM133731Buchanan-Wollaston_A-3-bwoll-C0S_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
16.199.5E-MEXP-509-raw-cel-829148666
15.299.4GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
15.199.4E-ATMX-32-raw-cel-1562974681
13.899.4GSM133733Buchanan-Wollaston_A-5-bwoll-NG1_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
13.799.4E-MEXP-509-raw-cel-829148090
13.599.4GSM133736Buchanan-Wollaston_A-8-bwoll-Ei2_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.581e-178626At1g13110837868CYP71B7member of CYP71BC.G.S.X.
0.782e-177623At3g26830822298PAD3 (PHYTOALEXIN DEFICIENT 3)Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.C.G.S.X.
0.809e-164577At1g13100837867CYP71B29putative cytochrome P450C.G.S.X.
0.465e-48192At3g26210822222CYP71B23putative cytochrome P450C.G.S.X.
0.192e-1997At3g26160822216CYP71B17putative cytochrome P450C.G.S.X.
0.109e-1375At5g35715833546CYP71B8encodes a protein with cytochrome P450 domainC.G.S.X.
0.173e-1273At3g44250823550CYP71B38putative cytochrome P450C.G.S.X.
0.281e-1171At3g26200822221CYP71B22putative cytochrome P450C.G.S.X.
0.171e-1171At1g13080837865CYP71B2 (CYTOCHROME P450 71B2)cytochrome P450 monooxygenaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e-344Glycine maxGmaAffx.83206.1.S1_atBE610184--2e-2At3g26210CYP71B23C.G.S.X.
0.021e+034Hordeum vulgareHVSMEf0019G05r2_s_atHVSMEf0019G05r2--2e+0At5g11910esterase/lipase/thioesterase family proteinC.G.S.X.
0.049e-240Oryza sativaOs03g05684009631.m03553-E-class P450, group I family protein1e-4At1g13110CYP71B7C.G.S.X.
0.042e-242Populus trichocarpaPtpAffx.18471.1.A1_atCV245559cytochrome P450 /// cytochrome P450 /// cytochrome P450-7e-3At1g13090CYP71B28C.G.S.X.
0.031e-552Triticum aestivumTa.1506.1.A1_a_atBE430555--1e-5At1g13090CYP71B28C.G.S.X.
0.026e-238Vitis vinifera1609740_atBQ794791hypothetical protein LOC100262754-1e-1At5g14440-C.G.S.X.
0.038e-238Zea maysZm.15779.1.A1_atCD484306--7e-2At3g14670unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00347Link to KaPPA-View 4Cytochrome P450



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00903Link to KEGG PATHWAYLimonene and pinene degradation
00945Link to KEGG PATHWAYStilbenoid, diarylheptanoid and gingerol biosynthesis
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