CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g13030

Gene name sphere organelles protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.32 35.7 At1g13030 837860 sphere organelles protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.55 70.6 At2g18330 816348 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV S.X. H.G.
0.33 38.1 At1g02970 839453 WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) Protein kinase that negatively regulates the entry into mitosis. S.X. H.G.
0.33 38.1 At1g80270 844367 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF S.X. H.G.
0.18 11.4 At1g18190 838398 GC2 (golgin candidate 2) This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC2 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (508–668 aa) portion of the protein. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
152.1 99.9 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
79.3 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
74.6 99.9 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
65.9 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
58.7 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.1 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.8 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.5 99.8 GSM133761 Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
47.7 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.9 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-2 40 At5g24460 832517 unknown protein F:unknown;P:biological_process unknown;C:cell wall;PFO C.G. S.X.
0.01 2e-1 38 At5g59350 836054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 2e-1 38 At5g51850 835260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
0.01 2e-1 38 At3g14240 820644 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.01 2e-1 38 At2g20120 816531 COV1 (CONTINUOUS VASCULAR RING) Encodes an integral membrane protein of unknown function, highly conserved between plants and bacteria; is likely to be involved in a mechanism that negatively regulates the differentiation of vascular tissue in the stem. Mutants display a dramatic increase in vascular tissue development in the stem in place of the interfascicular region that normally separates the vascular bundles. C.G. S.X.
0.01 2e-1 38 At2g20130 816532 LCV1 (LIKE COV 1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPA C.G. S.X.
0.01 2e-1 38 At1g68150 843143 WRKY9 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.01 2e-1 38 At1g53730 841811 SRF6 (STRUBBELIG-RECEPTOR FAMILY 6) F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-5 50 Glycine max Gma.13764.1.A1_at BU545613 - - 3e-5 At1g13030 sphere organelles protein-related C.G. S.X.
0.01 1e-1 38 Hordeum vulgare Contig6946_at Contig6946 - - 1e-5 At5g01200 myb family transcription factor C.G. S.X.
0.02 3e-2 42 Oryza sativa Os01g0866100 AK068991.1 - - 5e-65 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
0.02 1e-3 46 Populus trichocarpa PtpAffx.25173.1.A1_a_at CV243954 cytochrome P450 - 7e-9 At3g53130 LUT1 (LUTEIN DEFICIENT 1) C.G. S.X.
0.02 4e+0 34 Triticum aestivum Ta.7421.2.S1_at BE517472 BZip type transcription factor bZIP1 - 3e-1 At1g12830 unknown protein C.G. S.X.
0.03 4e-3 42 Vitis vinifera 1609539_at CF414995 hypothetical protein LOC100256103 - 5e-3 At1g13030 sphere organelles protein-related C.G. S.X.
0.01 2e+0 34 Zea mays Zm.19261.1.A1_at BM332912 non-imprinted in Prader-Willi/Angelman syndrome region protein 1 - 2e-2 At4g13800 permease-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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