CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g13000

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g13000 837858 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.45 58.3 At1g30000 839879 glycoside hydrolase family 47 protein F:mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding;P:protein amino acid N-linked glycosylation;C:Golgi apparatus;MFOPB S.X. H.G.
0.38 46.7 At1g21370 838736 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPO S.X. H.G.
0.38 46.7 At4g23850 828484 long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase F:catalytic activity;P:fatty acid biosynthetic process;C:plasma membrane;BOMFPAV S.X. H.G.
0.38 46.7 At1g14000 837960 VIK (VH1-INTERACTING KINASE) Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling. S.X. H.G.
0.36 43.6 At3g59950 825165 autophagy 4b (APG4b) F:peptidase activity;P:autophagy;C:chloroplast;MOFP S.X. H.G.
0.35 41.6 At3g05710 819740 SYP43 (SYNTAXIN OF PLANTS 43) member of SYP4 Gene Family S.X. H.G.
0.34 39.8 At1g28240 839718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBAFMV S.X. H.G.
0.34 39.8 At2g13560 815842 malate oxidoreductase, putative F:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFA S.X. H.G.
0.33 38.1 At1g18260 838406 suppressor of lin-12-like protein-related / sel-1 protein-related F:binding;P:biological_process unknown;C:endoplasmic reticulum, membrane;BOMFPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
89.4 99.9 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
85.6 99.9 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
80.9 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
73.7 99.9 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
59.2 99.8 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
31.7 99.7 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
29.2 99.7 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
28.7 99.7 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
22.6 99.6 GSM265414 Arabidopsis, root cells, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
22.4 99.6 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.52 4e-125 448 At3g26440 822248 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.33 5e-54 212 At1g67850 843111 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.25 6e-32 139 At1g24570 839071 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO C.G. S.X.
0.26 3e-24 113 At2g28310 817377 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 6e-42 173 Glycine max Gma.8052.1.S1_at BU547615 - - 9e-45 At2g28310 unknown protein C.G. S.X.
0.17 3e-35 149 Hordeum vulgare Contig10608_at Contig10608 - - 6e-32 At1g08040 unknown protein C.G. S.X.
0.13 2e-20 101 Oryza sativa Os01g0971200 AK064075.1 - Conserved hypothetical protein 4e-12 At2g28310 unknown protein C.G. S.X.
0.22 7e-26 119 Populus trichocarpa PtpAffx.71189.1.A1_a_at CV277875 hypothetical protein - 1e-32 At1g08040 unknown protein C.G. S.X.
0.14 2e-16 87 Triticum aestivum Ta.6006.1.S1_at CK216649 - - 9e-34 At1g08040 unknown protein C.G. S.X.
0.16 1e-11 69 Vitis vinifera 1618128_at CB009517 hypothetical protein LOC100267242 - 2e-112 At2g28310 unknown protein C.G. S.X.
0.19 9e-23 107 Zea mays Zm.6729.2.A1_at AI395991 lysine ketoglutarate reductase trans-splicing related 1 - 4e-23 At2g28310 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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