Gene omics information

Query gene ID At1g13000
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g13000837858unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.4558.3At1g30000839879glycoside hydrolase family 47 proteinF:mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding;P:protein amino acid N-linked glycosylation;C:Golgi apparatus;MFOPBS.X.H.G.
0.3846.7At1g21370838736unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPOS.X.H.G.
0.3846.7At4g23850828484long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetaseF:catalytic activity;P:fatty acid biosynthetic process;C:plasma membrane;BOMFPAVS.X.H.G.
0.3846.7At1g14000837960VIK (VH1-INTERACTING KINASE)Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling.S.X.H.G.
0.3643.6At3g59950825165autophagy 4b (APG4b)F:peptidase activity;P:autophagy;C:chloroplast;MOFPS.X.H.G.
0.3541.6At3g05710819740SYP43 (SYNTAXIN OF PLANTS 43)member of SYP4 Gene FamilyS.X.H.G.
0.3439.8At1g28240839718unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBAFMVS.X.H.G.
0.3439.8At2g13560815842malate oxidoreductase, putativeF:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFAS.X.H.G.
0.3338.1At1g18260838406suppressor of lin-12-like protein-related / sel-1 protein-relatedF:binding;P:biological_process unknown;C:endoplasmic reticulum, membrane;BOMFPVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
89.499.9GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
85.699.9GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
80.999.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
73.799.9GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
59.299.8GSM266666Arabidopsis, root cells, columella root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
31.799.7GSM184892Arabidopsis, root cells, columella root cap, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
29.299.7GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
28.799.7GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
22.699.6GSM265414Arabidopsis, root cells, -Fe, replicate 1GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
22.499.6GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.524e-125448At3g26440822248unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOC.G.S.X.
0.335e-54212At1g67850843111unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOC.G.S.X.
0.256e-32139At1g24570839071unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOC.G.S.X.
0.263e-24113At2g28310817377unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.296e-42173Glycine maxGma.8052.1.S1_atBU547615--9e-45At2g28310unknown proteinC.G.S.X.
0.173e-35149Hordeum vulgareContig10608_atContig10608--6e-32At1g08040unknown proteinC.G.S.X.
0.132e-20101Oryza sativaOs01g0971200AK064075.1-Conserved hypothetical protein4e-12At2g28310unknown proteinC.G.S.X.
0.227e-26119Populus trichocarpaPtpAffx.71189.1.A1_a_atCV277875hypothetical protein-1e-32At1g08040unknown proteinC.G.S.X.
0.142e-1687Triticum aestivumTa.6006.1.S1_atCK216649--9e-34At1g08040unknown proteinC.G.S.X.
0.161e-1169Vitis vinifera1618128_atCB009517hypothetical protein LOC100267242-2e-112At2g28310unknown proteinC.G.S.X.
0.199e-23107Zea maysZm.6729.2.A1_atAI395991lysine ketoglutarate reductase trans-splicing related 1-4e-23At2g28310unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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