Gene omics information

Query gene ID At1g12820
Gene name AFB3 (AUXIN SIGNALING F-BOX 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3846.7At1g12820837838AFB3 (AUXIN SIGNALING F-BOX 3)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:cellular_component unknown;PMFOBS.X.H.G.
0.5065.3At4g08980826476F-box family protein (FBW2)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MPOFS.X.H.G.
0.4457.2At5g49230834983HRB1 (HYPERSENSITIVE TO RED AND BLUE)Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction.S.X.H.G.
0.4050.8At2g32950817857COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light.S.X.H.G.
0.4050.8At4g10180826609DET1 (DE-ETIOLATED 1)Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.599.4E-MEXP-148-raw-cel-350529179
10.499.2GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.499.2E-MEXP-148-raw-cel-350528647
9.299.1GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.799.0GSM242961Mock day 7 (day7E1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
8.299.0GSM242964Steroid day 7 (day7D2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
8.098.9GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
7.998.9GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
7.198.8GSM242962Mock day 7 (day7E2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
7.098.7GSM184529Stele root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.760664At3g26810822296AFB2 (AUXIN SIGNALING F-BOX 2)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:plasma membrane;PMOFBC.G.S.X.
0.091e-552At3g62980825473TIR1 (TRANSPORT INHIBITOR RESPONSE 1)Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation.C.G.S.X.
0.034e-344At4g03190828045GRH1 (GRR1-LIKE PROTEIN 1)Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.C.G.S.X.
0.016e-240At3g63130825488RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1)Encodes a RAN GTPase activating protein involved in nuclear import, cell plate formation and mitotic spindle formation.C.G.S.X.
0.022e-138At5g49980835062AFB5 (Auxin F-Box protein 5)F:ubiquitin-protein ligase activity;P:unknown;C:unknown;PMOFC.G.S.X.
0.012e-138At1g50520841474CYP705A27member of CYP705AC.G.S.X.
0.019e-136At5g51460835220ATTPPAhomologous to the C-terminal part of microbial trehalose-6-phosphate phosphatasesC.G.S.X.
0.029e-136At5g42655834274-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.271e-1275Glycine maxGma.1049.1.S1_atAW733460--4e-18At1g12820AFB3 (AUXIN SIGNALING F-BOX 3)C.G.S.X.
0.047e+032Hordeum vulgareContig15906_atContig15906--1e-1At3g26810AFB2 (AUXIN SIGNALING F-BOX 2)C.G.S.X.
0.033e-861Oryza sativaOs.10149.1.S1_at---0C.G.S.X.
0.194e-25117Populus trichocarpaPtpAffx.87935.1.S1_atBU837659f-box family protein-3e-24At3g26810AFB2 (AUXIN SIGNALING F-BOX 2)C.G.S.X.
0.041e-242Triticum aestivumTa.3802.1.S1_atBJ247888--1e-1At1g04778unknown proteinC.G.S.X.
0.067e-1167Vitis vinifera1611859_atCF210940hypothetical protein LOC100263524-2e-13At1g12820AFB3 (AUXIN SIGNALING F-BOX 3)C.G.S.X.
0.024e-446Zea maysZm.5829.1.A1_atCA399817hypothetical protein LOC100278846-8e-3At4g03190GRH1 (GRR1-LIKE PROTEIN 1)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010152The final stages of microgametogenesis after the trinucleate stage has been reached resulting in viable pollen grains.
XGO:0048443The process whose specific outcome is the progression of the stamen over time, from its formation to the mature structure.
XGO:0002237A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage