CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g12780

Gene name UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g12780 837834 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1) Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress. S.X. H.G.
0.67 81.6 At1g76410 843974 ATL8 F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.55 70.6 At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. S.X. H.G.
0.53 68.6 At1g03090 838362 MCCA MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. S.X. H.G.
0.50 65.3 At3g06850 819869 BCE2 dihydrolipoamide branched chain acyltransferase S.X. H.G.
0.44 57.2 At3g13450 820547 DIN4 (DARK INDUCIBLE 4) branched chain alpha-keto acid dehydrogenase E1 beta S.X. H.G.
0.34 39.8 At1g06570 837168 PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. S.X. H.G.
0.31 33.8 At1g79700 844309 ovule development protein, putative F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB S.X. H.G.
0.28 30.3 At5g49360 834996 BXL1 (BETA-XYLOSIDASE 1) Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
58.5 99.8 GSM253196 RGA-GR-DEX-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
52.4 99.8 GSM253198 RGA-GR-DEX-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
39.3 99.8 E-MEXP-1112-raw-cel-1590665325
39.2 99.8 GSM253165 48h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
36.4 99.7 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
31.8 99.7 E-MEXP-1299-raw-cel-1519902498
31.7 99.7 GSM253166 48h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
31.1 99.7 GSM106915 opr3_JA_22 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
29.4 99.7 GSM134305 Penfield_1-7_endosperm-PAC_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
28.7 99.7 E-MEXP-1299-raw-cel-1519902871
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.87 0 975 At1g63180 842622 UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3) Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development. C.G. S.X.
0.12 6e-7 56 At4g10960 826696 UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5) Encodes a protein with UDP-D-glucose 4-epimerase activity. C.G. S.X.
0.16 9e-6 52 At4g23920 828492 UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2) Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in growth and cell wall carbohydrate biosynthesis. C.G. S.X.
0.10 2e-3 44 At1g64440 842752 RHD1 (ROOT HAIR DEFECTIVE 1) Encodes a protein with UDP-D-glucose 4-epimerase activity. Mutants in RHD1 have abnormally shaped root hairs with a bulbous region at the base. Allelic to REB1 encoding a UDP-D-glucose 4-epimerase involved in cell wall biosynthesis.Involved in growth and cell wall carbohydrate biosynthesis. C.G. S.X.
0.01 1e-1 38 At1g76390 843971 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:plasma membrane;PMFOBV C.G. S.X.
0.02 5e-1 36 At3g01640 819902 GHMP kinase family protein F:poly(U) binding, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOPAMF C.G. S.X.
0.01 5e-1 36 At1g28020 839695 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM C.G. S.X.
0.02 2e+0 34 At3g25480 822132 rhodanese-like domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 1e-27 125 Glycine max Gma.14653.2.S1_a_at BQ080095 - - 9e-33 At1g63180 UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3) C.G. S.X.
0.06 3e-4 46 Hordeum vulgare HVSMEm0008B04r2_s_at HVSMEm0008B04r2 UDP-D-glucose epimerase 1 - 5e-9 At4g23920 UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2) C.G. S.X.
0.10 1e-9 65 Oryza sativa Os09g0323000 AK063871.1 - UDP-glucose 4-epimerase (EC 5.1.3.2)(Galactowaldenase) (UDP-galactose 4-epimerase) 2e-17 At4g10960 UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5) C.G. S.X.
0.49 5e-45 182 Populus trichocarpa Ptp.3953.1.S1_s_at CX181129 hypothetical protein - 3e-45 At1g12780 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1) C.G. S.X.
0.06 4e-5 50 Triticum aestivum Ta.1450.3.S1_at BE429853 - - 4e-9 At4g23920 UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2) C.G. S.X.
0.47 4e-76 284 Vitis vinifera 1611653_at BQ797360 - - 9e-76 At1g12780 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1) C.G. S.X.
0.06 9e-1 34 Zea mays Zm.7402.1.A1_at AY106816.1 IDP1704 protein /// hypothetical protein LOC100193772 - 2e+0 At1g12780 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006950 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
X GO:0046369 The chemical reactions and pathways resulting in the formation of galactose, the aldohexose galacto-hexose.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00134 UDP-Sugar metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00052 Galactose metabolism
00520 Amino sugar and nucleotide sugar metabolism
01100 Metabolic pathways
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