CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g12560

Gene name ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At1g12560 837813 ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell. S.X. H.G.
0.73 85.5 At3g10710 820240 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM S.X. H.G.
0.57 73.8 At1g30870 839971 cationic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM S.X. H.G.
0.35 41.6 At4g33730 829515 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.33 38.1 At5g67400 836876 peroxidase 73 (PER73) (P73) (PRXR11) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
355.8 100.0 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
283.0 100.0 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
262.6 100.0 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
226.8 100.0 GSM184843 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
167.4 100.0 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
152.9 99.9 GSM226539 L9SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
131.6 99.9 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
129.9 99.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
116.3 99.9 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
115.3 99.9 GSM133983 Birnbaum_1-13_StageIII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.48 6e-31 135 At1g62980 842601 ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
0.06 4e-4 46 At2g28950 817444 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. C.G. S.X.
0.06 2e-3 44 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
0.03 2e-3 44 At3g55500 824715 ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. C.G. S.X.
0.09 6e-3 42 At5g02260 831736 ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
0.06 3e-2 40 At2g37640 818341 EXP3 member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-5 50 Glycine max GmaAffx.93176.1.S1_s_at CF808901 expansin - 2e-24 At2g28950 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) C.G. S.X.
0.05 3e+0 32 Hordeum vulgare Contig3676_at Contig3676 - - 9e-6 At2g37640 EXP3 C.G. S.X.
0.05 5e-2 40 Oryza sativa OsAffx.18574.1.S1_x_at - - - 0 C.G. S.X.
0.07 1e-1 38 Populus trichocarpa PtpAffx.202325.1.S1_at pmrna4655 hypothetical protein - 6e-15 At4g01630 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) C.G. S.X.
0.06 2e-3 44 Triticum aestivum Ta.30670.1.S1_at AY543528.1 - - 2e-3 At1g12560 ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1619548_at CF209981 - - 1e+0 At4g18090 unknown protein C.G. S.X.
0.06 3e+0 32 Zea mays Zm.14498.1.A1_at AF332170.1 alpha expansin2 - 3e-15 At1g69530 ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009826 The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
C GO:0009828 The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana.
C GO:0009831 The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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