Gene omics information

Query gene ID At1g11970
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2319.3At1g11970837749-F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPFOVS.X.H.G.
0.4457.2At1g51990841628O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMS.X.H.G.
0.4457.2At2g36040818177transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.3235.7At4g18850827619unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3032.1At1g31260840014ZIP10 (ZINC TRANSPORTER 10 PRECURSOR)member of Fe(II) transporter isolog familyS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
351.1100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
304.8100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
298.0100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
277.2100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
230.6100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
217.4100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
187.0100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
178.0100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
168.5100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
167.8100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.411e-859At1g11980837750RUB3 (UBIQUITIN-RELATED PROTEIN 3)F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFVBC.G.S.X.
0.011e-136At5g02940831426-F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POBC.G.S.X.
0.041e-136At1g68340843163unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.016e-134At5g43745834395phosphotransferase-relatedF:unknown;P:unknown;C:chloroplast, chloroplast envelope;POBC.G.S.X.
0.026e-134At5g19840832104transcription factor jumonji (jmjC) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPVC.G.S.X.
0.026e-134At3g19820821519DWF1 (DWARF 1)Involved in the conversion of the early brassinosteroid precursor 24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype. DWF1 is a Ca2+-dependent calmodulin-binding protein.C.G.S.X.
0.016e-134At1g35220840411unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPC.G.S.X.
0.022e+032At5g49650835027xylulose kinase, putativeF:xylulokinase activity, phosphotransferase activity, alcohol group as acceptor;P:carbohydrate metabolic process, xylulose catabolic process;C:cellular_component unknown;BOMFPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e+032Glycine maxGma.13796.1.A1_atBE823562--3e+0At1g65483unknown proteinC.G.S.X.
0.042e+128Hordeum vulgareContig11701_atContig11701--1e+0At3g04040unknown proteinC.G.S.X.
0.034e+032Oryza sativaOsAffx.29174.1.S1_at---0C.G.S.X.
0.063e+032Populus trichocarpaPtpAffx.217833.1.S1_x_atpmrna33255hypothetical protein-2e+0At1g11970-C.G.S.X.
0.049e+030Triticum aestivumTaAffx.84787.1.S1_atCA637110--4e+0At4g40011unknown proteinC.G.S.X.
0.043e+030Vitis vinifera1618057_atCF207962hypothetical protein LOC100265221-4e+0At5g49410unknown proteinC.G.S.X.
0.034e+030Zea maysZm.15044.1.A1_atCF631612hypothetical protein LOC100193123-9e-18At1g08450CRT3 (CALRETICULIN 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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