CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g11840

Gene name ATGLX1 (GLYOXALASE I HOMOLOG)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g11840 837731 ATGLX1 (GLYOXALASE I HOMOLOG) Encodes a glyoxalase I homolog ATGLX1. S.X. H.G.
0.56 73.0 At3g10920 820263 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) manganese superoxide dismutase (MSD1) S.X. H.G.
0.51 66.3 At1g79230 844264 MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification. S.X. H.G.
0.43 55.3 At4g13360 826967 catalytic F:catalytic activity;P:metabolic process;C:unknown;BOMFPA S.X. H.G.
0.41 52.4 At1g47420 841147 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleus;PO S.X. H.G.
0.39 48.4 At2g44060 819011 late embryogenesis abundant family protein / LEA family protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, response to cadmium ion, response to desiccation;C:plasma membrane, membrane;PBOA S.X. H.G.
0.39 48.4 At5g13450 831186 ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);BOMPF S.X. H.G.
0.37 45.0 At5g08530 830752 CI51 (51 kDa subunit of complex I) F:4 iron, 4 sulfur cluster binding, NAD or NADH binding, FMN binding, NADH dehydrogenase (ubiquinone) activity, oxidoreductase activity, acting on NADH or NADPH;P:mitochondrial electron transport, NADH to ubiquinone;C:mitochondrion, respiratory chain complex I;OBMFPA S.X. H.G.
0.36 43.6 At2g21870 816723 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleolus, chloroplast, plastid, membrane;PMOBA S.X. H.G.
0.35 41.6 At2g24200 816954 cytosol aminopeptidase F:manganese ion binding, metalloexopeptidase activity, aminopeptidase activity;P:response to cadmium ion, proteolysis;C:vacuole;OBMPFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.2 99.0 E-MEXP-722-raw-cel-1062243239
7.5 98.8 E-MEXP-722-raw-cel-1062243048
7.4 98.8 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
7.3 98.8 GSM75515 Col-0 6h MOCK replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
7.0 98.7 E-MEXP-722-raw-cel-1062243429
6.9 98.7 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
6.8 98.7 E-MEXP-265-raw-cel-414617890
6.8 98.7 E-ATMX-31-raw-cel-1516947984
6.7 98.7 GSM207296 Seedling_ConstantWhiteLight_64hr GSE8365 Identification of circadian-regulated genes of Arabidopsis thaliana.
6.7 98.7 GSM207286 Seedling_ConstantWhiteLight_24hr GSE8365 Identification of circadian-regulated genes of Arabidopsis thaliana.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 7e-9 61 At1g67280 843048 lactoylglutathione lyase, putative / glyoxalase I, putative F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA C.G. S.X.
0.01 4e-1 36 At3g62300 825403 agenet domain-containing protein F:RNA binding;P:unknown;C:cellular_component unknown;PMOB C.G. S.X.
0.02 2e+0 34 At5g57440 835849 GS1 a member of haloacid dehalogenase-like hydrolase family C.G. S.X.
0.02 2e+0 34 At5g02760 831234 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 6e-75 282 Glycine max Gma.5683.2.S1_at CA935387 - - 7e-75 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
0.36 2e-13 75 Hordeum vulgare Contig1934_at Contig1934 - - 7e-13 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
0.27 2e-13 77 Oryza sativa Os08g0191700 AK066092.1 - Glyoxalase I family protein 2e-13 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
0.54 5e-60 232 Populus trichocarpa Ptp.4360.1.S1_s_at BU831376 hypothetical protein - 4e-60 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
0.24 3e-14 79 Triticum aestivum Ta.1842.2.S1_at BJ321503 - - 5e-14 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
0.62 2e-71 268 Vitis vinifera 1609781_s_at CB341681 hypothetical protein LOC100257313 - 1e-66 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
0.28 3e-18 91 Zea mays Zm.5962.1.S1_a_at AY241545.1 glyoxalase I - 1e-17 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
C GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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