CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g11700

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO S.X. H.G.
0.67 81.6 At4g33040 829441 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB S.X. H.G.
0.57 73.8 At5g59050 836022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.00 0.0 At2g21970 816733 SEP2 (STRESS ENHANCED PROTEIN 2) stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein S.X. H.G.
0.00 0.0 At1g28570 839757 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
128.5 99.9 E-ATMX-32-raw-cel-1562974681
97.6 99.9 E-ATMX-32-raw-cel-1562974409
92.7 99.9 E-ATMX-32-raw-cel-1562974504
92.3 99.9 E-ATMX-32-raw-cel-1562974595
90.3 99.9 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
83.8 99.9 GSM131539 ATGE_25_C GSE5630 AtGenExpress: Developmental series (leaves)
80.3 99.9 E-ATMX-32-raw-cel-1562974621
73.9 99.9 GSM133737 Buchanan-Wollaston_A-9-bwoll-Co1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
61.7 99.8 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
60.4 99.8 GSM131537 ATGE_25_A GSE5630 AtGenExpress: Developmental series (leaves)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.35 2e-24 113 At1g61930 842488 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.06 2e-5 50 At4g04630 825795 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.05 3e-4 46 At3g45210 823657 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.04 3e-4 46 At1g29640 839841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-2 40 At5g44700 834499 GSO2 (GASSHO 2) Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis. C.G. S.X.
0.02 3e-1 36 At5g03450 831835 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFVBA C.G. S.X.
0.01 3e-1 36 At2g33170 817878 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 3e-1 36 At2g19480 816467 NAP1 This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 7e-3 42 Glycine max GmaAffx.91092.1.S1_at CF806817 - - 5e-3 At1g11700 unknown protein C.G. S.X.
0.03 9e-3 40 Hordeum vulgare Contig5793_at Contig5793 - - 1e-1 At5g23950 C2 domain-containing protein C.G. S.X.
0.04 6e-1 36 Oryza sativa OsAffx.13874.1.S1_at - - - 0 C.G. S.X.
0.14 7e-9 61 Populus trichocarpa Ptp.1562.2.S1_a_at CV260258 hypothetical protein - 7e-9 At1g11700 unknown protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.25240.1.S1_at CA704029 - - 1e+0 At1g11700 unknown protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1618179_at CF568870 - - 4e-3 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.03 2e+0 32 Zea mays Zm.9101.1.A1_at BM348554 hypothetical protein LOC100279567 - 2e+0 At5g11990 proline-rich family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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