CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g11545

Gene name xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At1g11545 837698 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO S.X. H.G.
0.40 50.8 At4g25260 828629 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;P S.X. H.G.
0.31 33.8 At1g75780 843911 TUB1 beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses S.X. H.G.
0.18 11.4 At5g10430 830907 AGP4 (ARABINOGALACTAN PROTEIN 4) Encodes arabinogalactan-protein (AGP4). S.X. H.G.
0.15 7.8 At1g25230 839105 purple acid phosphatase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MOBPF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.9 99.8 GSM134513 Col-0_4day_dark_-lincomycin_rep1 GSE5759 red illumination w/o lincomycin
41.0 99.8 GSM134517 Col-0_4day_red illumination_-lincomycin_rep1 GSE5759 red illumination w/o lincomycin
40.8 99.8 GSM134514 Col-0_4day_dark_-lincomycin_rep2 GSE5759 red illumination w/o lincomycin
33.6 99.7 E-MEXP-1784-raw-cel-1661573117
33.5 99.7 E-MEXP-1784-raw-cel-1661573138
32.5 99.7 GSM134516 Col-0_4day_dark_+lincomycin_rep2 GSE5759 red illumination w/o lincomycin
31.3 99.7 E-MEXP-1784-raw-cel-1661573032
31.0 99.7 E-MEXP-1784-raw-cel-1661573096
29.0 99.7 GSM226268 WT(Ler)_Dark_replicate2 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
26.5 99.7 GSM134515 Col-0_4day_dark_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 1e-4 48 At5g13870 831233 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) EXGT-A4, endoxyloglucan transferase, C.G. S.X.
0.05 7e-3 42 At5g57560 835860 TCH4 (Touch 4) Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli C.G. S.X.
0.01 3e-2 40 At5g10690 830933 pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA C.G. S.X.
0.05 5e-1 36 At3g25050 822096 XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3) encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment. C.G. S.X.
0.04 5e-1 36 At2g14620 815950 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO C.G. S.X.
0.01 5e-1 36 At1g50660 841488 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.02 2e+0 34 At5g47520 834802 AtRABA5a (Arabidopsis Rab GTPase homolog A5a) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA C.G. S.X.
0.07 2e+0 34 At4g14130 827051 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) xyloglucan endotransglycosylase-related protein (XTR7) C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 8e-19 95 Glycine max GmaAffx.89045.1.A1_s_at CK605938 - - 4e-19 At1g11545 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.06 2e-4 46 Hordeum vulgare Contig5258_at Contig5258 - - 2e-10 At5g13870 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) C.G. S.X.
0.13 1e-15 85 Oryza sativa Os07g0529700 AK073731.1 - Xyloglucan endo-transglycosylase-like protein 1e-15 At1g11545 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.32 7e-13 75 Populus trichocarpa PtpAffx.57260.1.S1_at CV232927 - - 7e-13 At1g11545 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.07 5e-1 36 Triticum aestivum Ta.28766.1.S1_x_at CN011869 - - 3e-12 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.12 1e-7 56 Vitis vinifera 1613520_at CF372514 hypothetical protein LOC100257324 - 1e-6 At1g11545 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.16 1e-8 59 Zea mays Zm.19221.1.S1_at CO524032 - - 5e-8 At1g11545 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
L GO:0006073 The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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