CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g11540

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At1g11540 837697 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBAP S.X. H.G.
0.92 96.0 At1g08090 837327 ATNRT2:1 (NITRATE TRANSPORTER 2:1) High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake. S.X. H.G.
0.88 94.0 At1g70880 843425 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At5g37450 833722 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.86 93.1 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. S.X. H.G.
0.80 89.8 At1g49860 841409 ATGSTF14 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.64 78.9 At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA S.X. H.G.
0.60 75.7 At1g33840 840280 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
144.6 99.9 E-MEXP-828-raw-cel-1156922509
138.1 99.9 E-MEXP-828-raw-cel-1156922829
134.1 99.9 E-MEXP-828-raw-cel-1156922386
126.1 99.9 E-MEXP-828-raw-cel-1156922342
126.1 99.9 E-MEXP-828-raw-cel-1156922923
120.9 99.9 E-MEXP-828-raw-cel-1156922809
109.7 99.9 E-MEXP-828-raw-cel-1156922368
107.0 99.9 E-MEXP-828-raw-cel-1156922296
100.6 99.9 E-MEXP-828-raw-cel-1156922708
97.7 99.9 E-MEXP-828-raw-cel-1156922455
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 2e-93 343 At1g61740 842471 unknown protein F:unknown;P:unknown;C:endomembrane system, integral to membrane;BOPA C.G. S.X.
0.17 1e-7 57 At4g21250 827874 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;OBPA C.G. S.X.
0.08 1e-4 48 At4g21260 827875 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;OBPA C.G. S.X.
0.02 9e-3 42 At3g55780 824744 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO C.G. S.X.
0.01 1e-1 38 At1g11680 837712 CYP51G1 (CYTOCHROME P450 51G1) putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis. C.G. S.X.
0.03 5e-1 36 At5g41071 6241290 unknown protein F:unknown;P:unknown;C:unknown C.G. S.X.
0.01 5e-1 36 At3g56040 824770 UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3) F:unknown;P:biological_process unknown;C:chloroplast;PFOMB C.G. S.X.
0.02 5e-1 36 At3g15020 820731 malate dehydrogenase (NAD), mitochondrial, putative F:in 6 functions;P:defense response to bacterium;C:mitochondrion, apoplast, membrane;BOMPFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max Gma.2841.2.S1_s_at BM523133 - - 2e-5 At4g10970 unknown protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare HY07C01u_at HY07C01u - - 5e-2 At1g69780 ATHB13 C.G. S.X.
0.02 1e+0 36 Oryza sativa Os06g0265900 9634.m01559 - Plant specific of unknown function DUF860 familyprotein 1e-1 At2g31290 ubiquitin thiolesterase C.G. S.X.
0.17 5e-5 50 Populus trichocarpa Ptp.3711.1.S1_s_at DN493224 hypothetical protein - 3e-5 At1g11540 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.30664.1.S1_at BT009339.1 - - 2e-1 At5g40550 unknown protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1620221_at CF517910 - - 1e+0 At5g37440 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.241.1.A1_at AI670253 - - 3e+0 At1g75190 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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