CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g11330

Gene name S-locus lectin protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g11330 837675 S-locus lectin protein kinase family protein F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA S.X. H.G.
0.33 38.1 At1g57870 842162 ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42) F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:response to salt stress, hyperosmotic response;C:cytosol;MOPFBVA S.X. H.G.
0.25 22.6 At5g04920 830374 vacuolar protein sorting 36 family protein / VPS36 family protein F:transporter activity;P:vesicle-mediated transport;C:ESCRT II complex;MFOP S.X. H.G.
0.17 10.2 At5g01850 831760 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.11 4.1 At3g26600 822269 ARO4 (ARMADILLO REPEAT ONLY 4) Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules. S.X. H.G.
0.11 4.1 At4g29810 829103 ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
186.5 100.0 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
78.3 99.9 GSM184503 Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
74.4 99.9 GSM184509 Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.6 99.8 GSM218587 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
59.5 99.8 GSM218586 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
48.5 99.8 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
41.1 99.8 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
38.7 99.8 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.2 99.7 GSM184505 Pericycle root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.2 99.7 GSM142646 MC002_ATH1_A8.3-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.19 2e-85 317 At1g11300 837672 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
0.23 1e-77 291 At1g11350 837677 SD1-13 (S-DOMAIN-1 13) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.04 9e-8 59 At1g11340 837676 S-locus lectin protein kinase family protein F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
0.03 3e-7 57 At4g21370 827889 S-locus protein kinase, putative The Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1. C.G. S.X.
0.05 1e-6 56 At3g16030 820848 CES101 (CALLUS EXPRESSION OF RBCS 101) F:in 7 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 2e-5 52 At1g61490 842443 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
0.09 2e-5 52 At1g61610 842457 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 2e-5 52 At1g61550 842449 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
0.05 8e-5 50 At4g21380 827890 ARK3 (A. THALIANA RECEPTOR KINASE 3) encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 5e-10 67 Glycine max GmaAffx.24407.1.S1_at BF071319 - - 1e-10 At1g11330 S-locus lectin protein kinase family protein C.G. S.X.
0.03 3e-9 63 Hordeum vulgare Contig25378_at Contig25378 - - 9e-18 At4g21390 B120 C.G. S.X.
0.04 1e-5 54 Oryza sativa Os01g0783800 NM_191516.1 - S-locus glycoprotein family protein 5e-12 At4g03230 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding C.G. S.X.
0.13 5e-16 87 Populus trichocarpa PtpAffx.224709.1.S1_s_at pmrna43521 hypothetical protein - 3e-16 At1g11330 S-locus lectin protein kinase family protein C.G. S.X.
0.04 5e-3 44 Triticum aestivum Ta.4696.1.S1_at BJ275186 - - 6e-6 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.03 3e-5 50 Vitis vinifera 1607610_at CD801680 hypothetical protein LOC100241095 - 2e-6 At4g23130 CRK5 (CYSTEINE-RICH RLK5) C.G. S.X.
0.02 2e+0 34 Zea mays Zm.1125.2.S1_at CF036557 - - 4e+0 At5g51860 MADS-box protein (AGL72) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
L GO:0048544 The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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