CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g11250

Gene name SYP125 (SYNTAXIN OF PLANTS 125)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At1g11250 837666 SYP125 (SYNTAXIN OF PLANTS 125) member of SYP12 Gene Family S.X. H.G.
0.57 73.8 At2g45610 819169 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BPOFMAV S.X. H.G.
0.57 73.8 At5g47470 834797 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BOPAM S.X. H.G.
0.50 65.3 At3g12160 820393 RABA4D (RAB GTPASE HOMOLOG A4D) Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity. S.X. H.G.
0.43 55.3 At2g13620 815847 ATCHX15 member of Putative Na+/H+ antiporter family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
560.9 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
470.7 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
191.6 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
154.2 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
150.1 99.9 E-MEXP-285-raw-cel-440782725
126.0 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
114.7 99.9 E-MEXP-285-raw-cel-440782791
105.3 99.9 E-MEXP-1138-raw-cel-1432773322
94.9 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
86.6 99.9 E-ATMX-35-raw-cel-1574334880
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.77 2e-136 486 At1g61290 842423 SYP124 (SYNTAXIN OF PLANTS 124) member of SYP12 Gene Family C.G. S.X.
0.12 3e-5 50 At4g03330 827970 SYP123 (SYNTAXIN OF PLANTS 123) member of SYP12 Gene Family C.G. S.X.
0.03 5e-4 46 At5g08080 830702 SYP132 (SYNTAXIN OF PLANTS 132) member of SYP13 Gene Family C.G. S.X.
0.02 1e-1 38 At5g10950 830962 cylicin-related F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA C.G. S.X.
0.02 1e-1 38 At4g18900 827624 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPAV C.G. S.X.
0.03 1e-1 38 At4g19550 827697 transcription regulator/ zinc ion binding F:transcription regulator activity, zinc ion binding;P:regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex;OMPFBV C.G. S.X.
0.01 4e-1 36 At3g09360 820092 RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding F:in 6 functions;P:translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex, nucleus;MOFBPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-20 101 Glycine max GmaAffx.23225.1.A1_at BU550619 - - 1e-15 At1g61290 SYP124 (SYNTAXIN OF PLANTS 124) C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig9394_at Contig9394 - - 1e+0 At3g07200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.05 4e-6 54 Oryza sativa Os06g0168500 AK100316.1 - Syntaxin-like protein (Fragment) 3e-6 At3g03800 SYP131 (SYNTAXIN OF PLANTS 131) C.G. S.X.
0.34 2e-28 127 Populus trichocarpa PtpAffx.209719.1.S1_at pmrna19184 hypothetical protein - 2e-28 At1g11250 SYP125 (SYNTAXIN OF PLANTS 125) C.G. S.X.
0.03 3e-2 40 Triticum aestivum Ta.23175.1.A1_at CA654210 - - 9e-5 At2g11910 unknown protein C.G. S.X.
0.04 5e-1 34 Vitis vinifera 1609341_s_at CF202467.1 hypothetical protein LOC100265359 - 2e-3 At5g40630 ubiquitin family protein C.G. S.X.
0.13 2e-4 46 Zea mays Zm.3781.1.S1_at CD447284 syntaxin 132 - 3e-4 At1g11250 SYP125 (SYNTAXIN OF PLANTS 125) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
S GO:0006944 The joining of two lipid bilayers to form a single membrane.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
04130 SNARE interactions in vesicular transport
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