Gene omics information

Query gene ID At1g11190
Gene name BFN1 (BIFUNCTIONAL NUCLEASE I)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g11190837660BFN1 (BIFUNCTIONAL NUCLEASE I)Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).S.X.H.G.
0.5773.8At3g45010823636scpl48 (serine carboxypeptidase-like 48)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBS.X.H.G.
0.5570.6At5g04200830299AtMC9 (metacaspase 9)F:cysteine-type peptidase activity;P:proteolysis;C:apoplast;FPBOAS.X.H.G.
0.157.8At1g26820839225RNS3 (RIBONUCLEASE 3)Encodes ribonuclease RNS3.S.X.H.G.
0.092.8At4g04460825776aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:endomembrane system;MFOPBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
142.299.9GSM131305AtGen_6-2621_Osmoticstress-Roots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
105.799.9GSM106912opr3_JA 8hrs_Rep1GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
105.599.9GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
89.699.9GSM184478Lateral Root Cap root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
89.099.9GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
82.899.9GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
81.999.9GSM106913opr3_JA_8 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
81.699.9GSM106915opr3_JA_22 hrs_Rep1GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
74.599.9GSM106914opr3_JA_8 hrs_Rep3GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
71.499.9GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.042e-344At4g21600828246ENDO5 (endonuclease 5)Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).C.G.S.X.
0.011e-138At5g48120834864bindingF:binding;P:unknown;C:cellular_component unknown;MFOPC.G.S.X.
0.031e-138At1g68290843158ENDO 2 (endonuclease 2)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.C.G.S.X.
0.021e-138At1g49200841343zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.075e-136At4g21585828244ENDO4 (endonuclease 4)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.C.G.S.X.
0.012e+034At5g01220831888SQD2 (sulfoquinovosyldiacylglycerol 2)involved in sulfolipid biosynthesisC.G.S.X.
0.042e+034At4g21590828245ENDO3 (endonuclease 3)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.C.G.S.X.
0.022e+034At4g23730828473aldose 1-epimerase family proteinF:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOPFMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-138Glycine maxGma.9599.1.A1_atBU551270--5e-2At1g11190BFN1 (BIFUNCTIONAL NUCLEASE I)C.G.S.X.
0.163e-1065Hordeum vulgareContig8356_s_atContig8356--8e-10At1g11190BFN1 (BIFUNCTIONAL NUCLEASE I)C.G.S.X.
0.202e-1481Oryza sativaOs04g0636400AK061848.1-CEL I mismatch endonuclease1e-14At1g11190BFN1 (BIFUNCTIONAL NUCLEASE I)C.G.S.X.
0.319e-31135Populus trichocarpaPtpAffx.209713.1.S1_atpmrna19174hypothetical protein-7e-31At1g11190BFN1 (BIFUNCTIONAL NUCLEASE I)C.G.S.X.
0.175e-756Triticum aestivumTa.26286.1.S1_a_atBJ250656--7e-7At1g11190BFN1 (BIFUNCTIONAL NUCLEASE I)C.G.S.X.
0.035e-134Vitis vinifera1610661_atCD801217similar to cytokinin receptor 1-7e-1At1g11190BFN1 (BIFUNCTIONAL NUCLEASE I)C.G.S.X.
0.022e-136Zea maysZm.5892.1.A1_atBM267559propionyl-CoA carboxylase beta chain-3e-11At4g34030MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006308The chemical reactions and pathways resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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