CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g10760

Gene name SEX1 (STARCH EXCESS 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g10760 837619 SEX1 (STARCH EXCESS 1) Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position. S.X. H.G.
0.89 94.6 At3g46970 823850 PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2) Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen. S.X. H.G.
0.57 73.8 At5g26570 832706 ATGWD3 chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position. S.X. H.G.
0.50 65.3 At2g40840 818682 DPE2 (DISPROPORTIONATING ENZYME 2) Encodes a cytosolic protein with transglucosidase and amylomaltase activity. It is an essential component of the pathway from starch to sucrose and cellular metabolism in leaves at night. The protein binds to heteroglycans and utilizes glucose, mannose and xylose as acceptors. Fucose and galactose can also act as acceptors but less efficiently than the previous three. It was also was also recently reported to act on maltodextrins. On the other hand, arabinose and fructose were not efficiently used. Its role probably includes metabolizing maltose exported from the chloroplast. Studies using maltose extracted from the double mutant be2-1 be3-2 showed that this enzyme is preferentially active of β-maltose. S.X. H.G.
0.42 53.9 At1g69830 843319 AMY3 (ALPHA-AMYLASE-LIKE 3) Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.0 99.7 GSM269822 T6 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
28.8 99.7 GSM269815 T6 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
27.3 99.7 GSM269831 T6 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
26.2 99.7 GSM269833 T8 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
24.8 99.6 GSM269824 T8 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
24.7 99.6 GSM131295 AtGen_6-2411_Osmoticstress-Shoots-6.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
19.8 99.6 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
19.1 99.6 GSM269817 T8 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
17.6 99.5 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
17.6 99.5 E-ATMX-32-raw-cel-1562974621
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 6e-7 57 At4g24450 828547 PWD (PHOSPHOGLUCAN, WATER DIKINASE) F:kinase activity, ATP binding;P:phosphorylation;C:chloroplast envelope;BAPOF C.G. S.X.
0.01 5e-1 38 At1g55440 841991 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;BMPOFVA C.G. S.X.
0.01 5e-1 38 At1g10300 837569 GTP-binding protein-related F:GTP binding;P:unknown;C:unknown;BOMFAPV C.G. S.X.
0.01 2e+0 36 At5g59660 836087 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA C.G. S.X.
0.01 2e+0 36 At5g05200 830402 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAV C.G. S.X.
0.01 2e+0 36 At5g53920 835475 ribosomal protein L11 methyltransferase-related F:protein methyltransferase activity;P:protein amino acid methylation;C:cytoplasm;BOAFMP C.G. S.X.
0.01 2e+0 36 At4g19645 827707 - F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 8e-38 161 Glycine max Gma.2574.1.S1_a_at BI469532 - - 3e-38 At1g10760 SEX1 (STARCH EXCESS 1) C.G. S.X.
0.12 7e-8 59 Hordeum vulgare Contig18313_at Contig18313 - - 3e-8 At1g10760 SEX1 (STARCH EXCESS 1) C.G. S.X.
0.22 9e-26 121 Oryza sativa Os06g0498400 AK058235.1 - R1 5e-26 At1g10760 SEX1 (STARCH EXCESS 1) C.G. S.X.
0.16 4e-30 135 Populus trichocarpa Ptp.5605.1.S1_at CN519919 hypothetical protein - 7e-31 At1g10760 SEX1 (STARCH EXCESS 1) C.G. S.X.
0.01 6e-1 38 Triticum aestivum TaAffx.91779.1.S1_at CA732909 - - 2e-5 At3g62700 ATMRP10 C.G. S.X.
0.24 4e-82 305 Vitis vinifera 1614206_at CA816816 hypothetical protein LOC100246568 - 7e-82 At1g10760 SEX1 (STARCH EXCESS 1) C.G. S.X.
0.01 1e-2 42 Zea mays Zm.10170.2.S1_at BM078288 Hypothetical protein LOC100194222 - 3e-14 At5g56140 KH domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009610 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiotic fungus, a fungus living in close physical association with another organism.
X GO:0009631 Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures.
X GO:0005983 The chemical reactions and pathways resulting in the breakdown of starch, the most important reserve polysaccharide in plants.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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