CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g10585

Gene name transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At1g10585 837600 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P S.X. H.G.
0.73 85.5 At3g46660 823819 UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF S.X. H.G.
0.60 75.7 At1g61120 842405 TPS04 (TERPENE SYNTHASE 04) Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum. S.X. H.G.
0.57 73.8 At3g43250 823400 cell cycle control protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB S.X. H.G.
0.50 65.3 At4g37990 829955 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity. S.X. H.G.
0.44 57.2 At3g55970 824763 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
173.8 100.0 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
157.3 99.9 GSM142834 MG001_ATH1_A12-Torres-5N6 GSE6176 Impact of Type III effectors on plant defense responses
151.5 99.9 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
148.9 99.9 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
147.5 99.9 E-MEXP-1443-raw-cel-1581869745
139.8 99.9 E-MEXP-1443-raw-cel-1581869688
137.2 99.9 E-MEXP-1443-raw-cel-1581869803
134.6 99.9 GSM142836 MG001_ATH1_A15-Torres-4N6 GSE6176 Impact of Type III effectors on plant defense responses
133.4 99.9 GSM142832 GM001_ATH1_A9-Torres-3N6_repeat2 GSE6176 Impact of Type III effectors on plant defense responses
127.6 99.9 GSM142830 GM001_ATH1_A14-Torres-4N3_repeat2 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 1e-163 575 At1g10586 6240488 transcription regulator F:transcription regulator activity;P:regulation of transcription;C:nucleus;P C.G. S.X.
0.01 3e-1 36 At1g48490 841270 kinase F:kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MOPFBVA C.G. S.X.
0.01 1e+0 34 At5g61480 836269 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.03 1e+0 34 At4g22600 828356 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 1e+0 34 At2g39780 818563 RNS2 (RIBONUCLEASE 2) S-like ribonuclease C.G. S.X.
0.02 1e+0 34 At1g66350 842953 RGL1 (RGA-LIKE 1) Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.93428.1.S1_s_at CF809153 - - 2e-2 At4g36500 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HW06J10u_s_at HW06J10u - - 8e+0 At4g09984 LCR34 (Low-molecular-weight cysteine-rich 34) C.G. S.X.
0.03 1e-1 38 Oryza sativa Os07g0574900 AK111263.1 - Conserved hypothetical protein 7e-2 At1g10585 transcription factor C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.46220.2.A1_at CV242735 hypothetical protein - 2e+0 At2g38760 ANNAT3 (ANNEXIN ARABIDOPSIS 3) C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.31193.1.S1_at CA618639 - - 9e-1 At5g65170 VQ motif-containing protein C.G. S.X.
0.06 5e-3 40 Vitis vinifera 1620545_at CF204225.1 - - 7e-5 At1g10586 transcription regulator C.G. S.X.
0.03 2e+0 32 Zea mays Zm.1313.1.A1_s_at BM078737 - - 1e+0 At5g26848 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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