CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g10070

Gene name ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g10070 837543 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. S.X. H.G.
0.82 90.9 At1g08630 837385 THA1 (Threonine Aldolase 1) Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings. S.X. H.G.
0.82 90.9 At1g21400 838739 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPA S.X. H.G.
0.67 81.6 At3g47340 823888 ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. S.X. H.G.
0.59 74.7 At1g03090 838362 MCCA MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. S.X. H.G.
0.46 59.8 At1g06570 837168 PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. S.X. H.G.
0.44 57.2 At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. S.X. H.G.
0.44 57.2 At3g13450 820547 DIN4 (DARK INDUCIBLE 4) branched chain alpha-keto acid dehydrogenase E1 beta S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
148.1 99.9 E-TABM-63-raw-cel-681137124
107.1 99.9 GSM158703 WT-ESTRADIOL-REP1 GSE6954 Identification of AGL24 downstream genes by using XVE inducible system
106.2 99.9 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
101.4 99.9 E-TABM-63-raw-cel-681137195
81.0 99.9 GSM282693 arf2_brz_1 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
78.5 99.9 Capper_1-7_D9_estradiol
76.8 99.9 GSM158702 HY213-ESTRADIOL-REP1 GSE6954 Identification of AGL24 downstream genes by using XVE inducible system
71.7 99.9 E-TABM-63-raw-cel-681137052
71.2 99.9 E-TABM-63-raw-cel-681137015
70.3 99.9 Capper_1-3_B8_estradiol
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 4e-8 59 At3g49680 824130 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. C.G. S.X.
0.08 1e-5 52 At1g10060 837542 branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1) encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. C.G. S.X.
0.01 1e-1 38 At2g42250 818826 CYP712A1 member of CYP712A C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 3e-6 54 Glycine max GmaAffx.93561.1.S1_at CF807977 - - 3e-6 At1g10070 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig20819_at Contig20819 - - 8e-2 At3g13065 SRF4 (STRUBBELIG-RECEPTOR FAMILY 4) C.G. S.X.
0.04 3e-4 48 Oryza sativa Os03g0106400 AK108687.1 - Branched-chain-amino-acid aminotransferase 5,chloroplast precursor (EC 2.6.1.42) (Atbcat-5) 6e-14 At5g65780 ATBCAT-5 C.G. S.X.
0.12 6e-11 69 Populus trichocarpa PtpAffx.94207.1.S1_at BU811592 hypothetical protein - 5e-11 At1g10070 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) C.G. S.X.
0.06 4e-5 50 Triticum aestivum TaAffx.129191.1.S1_at CD906345 - - 3e-5 At1g10070 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) C.G. S.X.
0.06 3e-3 42 Vitis vinifera 1622060_at BM436271 - - 3e-32 At5g65780 ATBCAT-5 C.G. S.X.
0.13 7e-8 57 Zea mays Zm.2520.1.A1_at AW400289 hypothetical protein LOC100191754 - 5e-21 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0009081 The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00009 Leucine, valine, isoleucine and alanine biosynthesis
00077 Leucine, valine and isoleucine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00280 Valine, leucine and isoleucine degradation
00290 Valine, leucine and isoleucine biosynthesis
00770 Pantothenate and CoA biosynthesis
00966 Glucosinolate biosynthesis
01063 Biosynthesis of alkaloids derived from shikimate pathway
01065 Biosynthesis of alkaloids derived from histidine and purine
01100 Metabolic pathways
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage