CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g10060

Gene name branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.13 5.8 At1g10060 837542 branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1) encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. S.X. H.G.
0.75 86.9 At1g01600 839347 CYP86A4 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers. S.X. H.G.
0.67 81.6 At2g42990 818901 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.57 73.8 At5g55720 835666 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.50 65.3 At1g63710 842675 CYP86A7 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
545.7 100.0 E-MEXP-1443-raw-cel-1581869573
442.4 100.0 E-MEXP-1443-raw-cel-1581869515
154.5 99.9 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
136.5 99.9 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
117.9 99.9 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
85.0 99.9 E-MEXP-1443-raw-cel-1581869803
75.1 99.9 E-MEXP-1443-raw-cel-1581869745
34.1 99.7 GSM232881 Mut.1-5.90 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
30.7 99.7 E-MEXP-849-raw-cel-1181980918
26.8 99.7 GSM131630 ATGE_58_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 8e-6 52 At1g10070 837543 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. C.G. S.X.
0.05 5e-4 46 At1g50090 841432 aminotransferase class IV family protein F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA C.G. S.X.
0.04 1e-1 38 At1g50110 841433 branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6) F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA C.G. S.X.
0.04 5e-1 36 At5g65780 836707 ATBCAT-5 encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant C.G. S.X.
0.01 2e+0 34 At5g54960 835587 PDC2 (pyruvate decarboxylase-2) pyruvate decarboxylase-2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 6e-1 36 Glycine max GmaAffx.92033.1.S1_at CF807745 - - 3e-7 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.04 6e-2 38 Hordeum vulgare Contig8247_at Contig8247 - - 2e-1 At1g10060 branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1) C.G. S.X.
0.03 2e-1 38 Oryza sativa Os08g0360200 9636.m02684 - Conserved hypothetical protein 2e-1 At1g33055 unknown protein C.G. S.X.
0.04 1e-2 42 Populus trichocarpa PtpAffx.41318.1.S1_a_at CV265728 hypothetical protein - 3e-53 At5g65780 ATBCAT-5 C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.2615.3.S1_x_at CA694417 - - 2e-8 At1g67785 unknown protein C.G. S.X.
0.05 1e-1 36 Vitis vinifera 1622060_at BM436271 - - 3e-32 At5g65780 ATBCAT-5 C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.1009.1.A1_at AI881408 - - 2e+0 At5g47320 RPS19 (RIBOSOMAL PROTEIN S19) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0009081 The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00009 Leucine, valine, isoleucine and alanine biosynthesis
00077 Leucine, valine and isoleucine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00966 Glucosinolate biosynthesis
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