CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g09610

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g09610 837488 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB S.X. H.G.
0.96 97.3 At2g41610 818759 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.95 97.0 At1g27380 839627 RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined. S.X. H.G.
0.95 97.0 At5g03170 831914 FLA11 F:unknown;P:unknown;C:anchored to membrane;PBOMAF S.X. H.G.
0.93 96.4 At2g29130 817462 LAC2 (laccase 2) putative laccase, knockout mutant had reduced root elongation under PEG-induced dehydration S.X. H.G.
0.93 96.4 At3g15050 820734 IQD10 (IQ-domain 10) F:calmodulin binding;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.93 96.4 At3g50220 824184 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.93 96.4 At5g17420 831608 IRX3 (IRREGULAR XYLEM 3) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181). S.X. H.G.
0.92 96.0 At5g67210 836856 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.91 95.6 At4g27435 828852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
270.9 100.0 E-MEXP-265-raw-cel-414617783
245.4 100.0 E-MEXP-265-raw-cel-414618693
204.5 100.0 E-MEXP-265-raw-cel-414617695
161.9 99.9 E-MEXP-265-raw-cel-414618796
148.4 99.9 E-MEXP-265-raw-cel-414618394
143.5 99.9 E-MEXP-265-raw-cel-414617890
137.0 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
134.1 99.9 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
129.7 99.9 E-MEXP-265-raw-cel-414618491
121.4 99.9 GSM133754 Turner_A-8-Turne-WT-Base2_SLD GSE5729 Role of COV in vascular patterning
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 4e-7 56 At1g33800 840272 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB C.G. S.X.
0.16 1e-4 48 At4g09990 826590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB C.G. S.X.
0.05 7e-3 42 At1g71690 843495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB C.G. S.X.
0.02 4e-1 36 At5g56340 835734 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
0.02 4e-1 36 At2g03770 814904 sulfotransferase family protein F:sulfotransferase activity;P:unknown;C:unknown;MOPBF C.G. S.X.
0.01 2e+0 34 At4g25350 828638 SHB1 (SHORT HYPOCOTYL UNDER BLUE1) SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development. C.G. S.X.
0.01 2e+0 34 At4g09160 826497 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:chloroplast;MOFBPVA C.G. S.X.
0.02 2e+0 34 At3g09760 820134 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMFOVB C.G. S.X.
0.02 2e+0 34 At3g09050 820058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPOBAF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-1 38 Glycine max Gma.364.1.A1_at AW309875 - - 3e-4 At4g09990 unknown protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare HV07G12r_at HV07G12r - - 8e+0 At5g04045 Expressed protein C.G. S.X.
0.04 3e-3 44 Oryza sativa OsAffx.3282.1.S1_at - - - 0 C.G. S.X.
0.17 3e-21 103 Populus trichocarpa Ptp.4689.1.S1_at CK093638 - - 3e-21 At1g09610 unknown protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.83331.1.S1_at CA658698 - - 4e+0 At2g43386 unknown protein C.G. S.X.
0.25 2e-21 101 Vitis vinifera 1622487_at CF215822 hypothetical protein LOC100260885 - 5e-21 At1g09610 unknown protein C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.1333.1.S1_s_at 11990232-81 - - 5e-50 Atcg01120 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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