Gene omics information

Query gene ID At1g09610
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g09610837488unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBS.X.H.G.
0.9697.3At2g41610818759unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9597.0At1g27380839627RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.S.X.H.G.
0.9597.0At5g03170831914FLA11F:unknown;P:unknown;C:anchored to membrane;PBOMAFS.X.H.G.
0.9396.4At2g29130817462LAC2 (laccase 2)putative laccase, knockout mutant had reduced root elongation under PEG-induced dehydrationS.X.H.G.
0.9396.4At3g15050820734IQD10 (IQ-domain 10)F:calmodulin binding;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.9396.4At3g50220824184unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.9396.4At5g17420831608IRX3 (IRREGULAR XYLEM 3)Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).S.X.H.G.
0.9296.0At5g67210836856unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.9195.6At4g27435828852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
137.099.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
134.199.9GSM133753Turner_A-7-Turne-WT-Base1_SLDGSE5729Role of COV in vascular patterning
121.499.9GSM133754Turner_A-8-Turne-WT-Base2_SLDGSE5729Role of COV in vascular patterning
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.084e-756At1g33800840272unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBC.G.S.X.
0.161e-448At4g09990826590unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBC.G.S.X.
0.057e-342At1g71690843495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBC.G.S.X.
0.024e-136At5g56340835734zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.024e-136At2g03770814904sulfotransferase family proteinF:sulfotransferase activity;P:unknown;C:unknown;MOPBFC.G.S.X.
0.012e+034At4g25350828638SHB1 (SHORT HYPOCOTYL UNDER BLUE1)SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development.C.G.S.X.
0.012e+034At4g09160826497SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:transporter activity;P:transport;C:chloroplast;MOFBPVAC.G.S.X.
0.022e+034At3g09760820134zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMFOVBC.G.S.X.
0.022e+034At3g09050820058unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPOBAFC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.081e-138Glycine maxGma.364.1.A1_atAW309875--3e-4At4g09990unknown proteinC.G.S.X.
0.032e-136Hordeum vulgareHV07G12r_atHV07G12r--8e+0At5g04045Expressed proteinC.G.S.X.
0.043e-344Oryza sativaOsAffx.3282.1.S1_at---0C.G.S.X.
0.173e-21103Populus trichocarpaPtp.4689.1.S1_atCK093638--3e-21At1g09610unknown proteinC.G.S.X.
0.031e-138Triticum aestivumTaAffx.83331.1.S1_atCA658698--4e+0At2g43386unknown proteinC.G.S.X.
0.252e-21101Vitis vinifera1622487_atCF215822hypothetical protein LOC100260885-5e-21At1g09610unknown proteinC.G.S.X.
0.031e+130Zea maysZmAffx.1333.1.S1_s_at11990232-81--5e-50Atcg01120-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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