Gene omics information

Query gene ID At1g09540
Gene name MYB61 (MYB DOMAIN PROTEIN 61)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4963.5At1g09540837480MYB61 (MYB DOMAIN PROTEIN 61)Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.S.X.H.G.
0.7989.1At1g34580840362monosaccharide transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAS.X.H.G.
0.7385.5At5g58500835963LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMS.X.H.G.
0.6478.9At3g17600821026IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.S.X.H.G.
0.6378.1At1g19190838502hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPMFAVS.X.H.G.
0.6075.7At1g79840844323GL2 (GLABRA 2)Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.S.X.H.G.
0.5974.7At1g71690843495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.5974.7At5g13670831212nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BOPAMS.X.H.G.
0.5368.6At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterS.X.H.G.
0.5368.6At5g53100835390oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
299.7100.0GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
201.9100.0GSM10479lec1-1 Cotyledon Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
193.7100.0GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
182.3100.0GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
133.899.9GSM10448WT Cotyledon Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
124.899.9GSM10449WT Cotyledon Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
95.899.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
90.599.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
85.299.9GSM147966lec1-1 Globular Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
81.499.9GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.312e-83309At1g57560842131AtMYB50 (myb domain protein 50)Member of the R2R3 factor gene family.C.G.S.X.
0.262e-65250At4g01680826853MYB55 (myb domain protein 55)Encodes a putative transcription factor (MYB55).C.G.S.X.
0.236e-44178At5g26660832723ATMYB86 (MYB DOMAIN PROTEIN 86)a MYB gene encodes a transcriptional repressor of the C4H gene which is involved in the biosynthesis of sinapate esters.C.G.S.X.
0.084e-1169At5g14340831284AtMYB40 (myb domain protein 40)Member of the R2R3 factor gene family.C.G.S.X.
0.119e-961At3g13890820602ATMYB26 (MYB DOMAIN PROTEIN 26)Encodes a putative transcription factor (MYB26). Mutants produces fertile pollen but plants are sterile because anthers do not dehisce. The cellulosic secondary wall thickenings are not formed in the endothecium as they are in non-mutant plants.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.332e-35151Glycine maxGmaAffx.28927.2.S1_atCA784132MYB transcription factor MYB160-9e-36At1g09540MYB61 (MYB DOMAIN PROTEIN 61)C.G.S.X.
0.037e-238Hordeum vulgareContig5841_atContig5841--4e-6At3g23250MYB15 (MYB DOMAIN PROTEIN 15)C.G.S.X.
0.157e-550Oryza sativaOs07g0634900C99577-Myb, DNA-binding domain containing protein4e-5At3g12720ATMYB67 (MYB DOMAIN PROTEIN 67)C.G.S.X.
0.254e-1893Populus trichocarpaPtpAffx.89488.1.S1_atCV130599hypothetical protein-2e-18At1g09540MYB61 (MYB DOMAIN PROTEIN 61)C.G.S.X.
0.107e-22105Triticum aestivumTa.3031.2.S1_atCA615676--5e-11At1g57560AtMYB50 (myb domain protein 50)C.G.S.X.
0.064e-548Vitis vinifera1621784_atAB073016.1--2e-7At2g31180MYB14 (MYB DOMAIN PROTEIN 14)C.G.S.X.
0.046e-238Zea maysZm.4412.1.S1_atAI714727MYB-like protein 1-4e-9At4g22680MYB85 (myb domain protein 85)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
XGO:0010119Any process that modulates the frequency, rate or extent of stomatal movement.
XGO:0010214The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage