CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g09540

Gene name MYB61 (MYB DOMAIN PROTEIN 61)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.49 63.5 At1g09540 837480 MYB61 (MYB DOMAIN PROTEIN 61) Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size. S.X. H.G.
0.79 89.1 At1g34580 840362 monosaccharide transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA S.X. H.G.
0.73 85.5 At5g58500 835963 LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM S.X. H.G.
0.64 78.9 At3g17600 821026 IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31) Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development. S.X. H.G.
0.63 78.1 At1g19190 838502 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPMFAV S.X. H.G.
0.60 75.7 At1g79840 844323 GL2 (GLABRA 2) Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER. S.X. H.G.
0.59 74.7 At1g71690 843495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.59 74.7 At5g13670 831212 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM S.X. H.G.
0.53 68.6 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter S.X. H.G.
0.53 68.6 At5g53100 835390 oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
299.7 100.0 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
201.9 100.0 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
193.7 100.0 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
182.3 100.0 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
133.8 99.9 GSM10448 WT Cotyledon Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
124.8 99.9 GSM10449 WT Cotyledon Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
95.8 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
90.5 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
85.2 99.9 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
81.4 99.9 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.31 2e-83 309 At1g57560 842131 AtMYB50 (myb domain protein 50) Member of the R2R3 factor gene family. C.G. S.X.
0.26 2e-65 250 At4g01680 826853 MYB55 (myb domain protein 55) Encodes a putative transcription factor (MYB55). C.G. S.X.
0.23 6e-44 178 At5g26660 832723 ATMYB86 (MYB DOMAIN PROTEIN 86) a MYB gene encodes a transcriptional repressor of the C4H gene which is involved in the biosynthesis of sinapate esters. C.G. S.X.
0.08 4e-11 69 At5g14340 831284 AtMYB40 (myb domain protein 40) Member of the R2R3 factor gene family. C.G. S.X.
0.11 9e-9 61 At3g13890 820602 ATMYB26 (MYB DOMAIN PROTEIN 26) Encodes a putative transcription factor (MYB26). Mutants produces fertile pollen but plants are sterile because anthers do not dehisce. The cellulosic secondary wall thickenings are not formed in the endothecium as they are in non-mutant plants. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 2e-35 151 Glycine max GmaAffx.28927.2.S1_at CA784132 MYB transcription factor MYB160 - 9e-36 At1g09540 MYB61 (MYB DOMAIN PROTEIN 61) C.G. S.X.
0.03 7e-2 38 Hordeum vulgare Contig5841_at Contig5841 - - 4e-6 At3g23250 MYB15 (MYB DOMAIN PROTEIN 15) C.G. S.X.
0.15 7e-5 50 Oryza sativa Os07g0634900 C99577 - Myb, DNA-binding domain containing protein 4e-5 At3g12720 ATMYB67 (MYB DOMAIN PROTEIN 67) C.G. S.X.
0.25 4e-18 93 Populus trichocarpa PtpAffx.89488.1.S1_at CV130599 hypothetical protein - 2e-18 At1g09540 MYB61 (MYB DOMAIN PROTEIN 61) C.G. S.X.
0.10 7e-22 105 Triticum aestivum Ta.3031.2.S1_at CA615676 - - 5e-11 At1g57560 AtMYB50 (myb domain protein 50) C.G. S.X.
0.06 4e-5 48 Vitis vinifera 1621784_at AB073016.1 - - 2e-7 At2g31180 MYB14 (MYB DOMAIN PROTEIN 14) C.G. S.X.
0.04 6e-2 38 Zea mays Zm.4412.1.S1_at AI714727 MYB-like protein 1 - 4e-9 At4g22680 MYB85 (myb domain protein 85) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
X GO:0010119 Any process that modulates the frequency, rate or extent of stomatal movement.
X GO:0010214 The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage