CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g09510

Gene name cinnamyl-alcohol dehydrogenase family / CAD family

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g09510 837476 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase S.X. H.G.
0.79 89.1 At1g20140 838604 ASK4 (ARABIDOPSIS SKP1-LIKE 4) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFV S.X. H.G.
0.78 88.6 At2g15325 816022 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.75 86.9 At3g42830 823327 ring-box protein Roc1/Rbx1/Hrt1, putative F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:ubiquitin ligase complex;MOFPV S.X. H.G.
0.75 86.9 At3g24280 822016 SMAP2 (small acidic protein 2) F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At1g75600 843895 histone H3.2, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO S.X. H.G.
0.75 86.9 At5g10230 830887 ANNAT7 (ANNEXIN ARABIDOPSIS 7) Encodes a calcium-binding protein annexin (AnnAt7). S.X. H.G.
0.74 86.1 At1g02980 839415 CUL2 (CULLIN 2) encodes an Arabidopsis cullin S.X. H.G.
0.73 85.5 At1g73560 843690 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.72 84.8 At3g09140 820068 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1022.6 100.0 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
680.1 100.0 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
641.4 100.0 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
501.5 100.0 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
478.9 100.0 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
451.0 100.0 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
273.6 100.0 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
227.1 100.0 GSM311278 Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
116.3 99.9 GSM311277 Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
94.3 99.9 GSM284391 Arabidopsis GPE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.51 5e-81 301 At1g09490 837474 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565 C.G. S.X.
0.39 2e-71 270 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase C.G. S.X.
0.41 7e-71 268 At1g09480 837471 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase C.G. S.X.
0.68 1e-63 244 At1g09500 837475 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase C.G. S.X.
0.13 2e-6 54 At5g19440 832064 cinnamyl-alcohol dehydrogenase, putative (CAD) similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase C.G. S.X.
0.03 5e-1 36 At5g17180 831582 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 7e-4 46 Glycine max Gma.8351.2.S1_s_at BM886530 - - 1e-7 At5g19440 cinnamyl-alcohol dehydrogenase, putative (CAD) C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig13463_at Contig13463 - - 2e+0 At5g17180 unknown protein C.G. S.X.
0.03 4e+0 34 Oryza sativa Os03g0189801 9631.m00852 - - 1e-1 At4g02425 unknown protein C.G. S.X.
0.08 7e-7 56 Populus trichocarpa PtpAffx.107166.1.S1_s_at CV257356 cinnamoyl CoA reductase-like protein - 3e-13 At1g51410 cinnamyl-alcohol dehydrogenase, putative (CAD) C.G. S.X.
0.05 5e-1 36 Triticum aestivum Ta.4073.2.S1_at CA676768 - - 1e-4 At1g09500 cinnamyl-alcohol dehydrogenase family / CAD family C.G. S.X.
0.13 1e-8 59 Vitis vinifera 1619808_at CB972340 hypothetical LOC100257572 - 4e-8 At1g09510 cinnamyl-alcohol dehydrogenase family / CAD family C.G. S.X.
0.02 3e+0 32 Zea mays Zm.11750.1.A1_at CK826706 hypothetical protein LOC100278014 - 2e+0 At3g12650 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009809 The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0044237 The chemical reactions and pathways by which individual cells transform chemical substances.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00064 The cinnamate-monolignol pathway/sinapoyl ester biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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