CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g09350

Gene name AtGolS3 (Arabidopsis thaliana galactinol synthase 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g09350 837457 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO S.X. H.G.
0.67 81.6 At3g55580 824723 regulator of chromosome condensation (RCC1) family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV S.X. H.G.
0.57 73.8 At1g16850 838256 unknown protein F:molecular_function unknown;P:response to salt stress;C:endomembrane system;P S.X. H.G.
0.44 57.2 At1g48100 841228 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA S.X. H.G.
0.36 43.6 At1g51090 841532 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
323.4 100.0 GSM131279 AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
287.0 100.0 GSM131280 AtGen_6-1612_Cold(4°C)-Shoots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
254.1 100.0 E-MEXP-1345-raw-cel-1559561229
229.3 100.0 GSM128801 Zarka_2-5_MT-24HCA(SOIL)_Rep1_ATH1 GSE5535 Response to cold, soil grown plants
226.6 100.0 E-MEXP-1345-raw-cel-1559561289
181.4 100.0 E-TABM-52-raw-cel-1583683326
174.4 100.0 GSM128802 Zarka_2-6_MT-24HCB(SOIL)_Rep2_ATH1 GSE5535 Response to cold, soil grown plants
161.5 99.9 E-TABM-52-raw-cel-1583683438
158.0 99.9 E-MEXP-1345-raw-cel-1559561259
150.9 99.9 GSM133407 Bramke_A1-warre-WTC GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.75 0 650 At1g56600 842114 AtGolS2 (Arabidopsis thaliana galactinol synthase 2) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO C.G. S.X.
0.48 2e-34 147 At2g47180 819331 AtGolS1 (Arabidopsis thaliana galactinol synthase 1) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:response to high light intensity, response to hydrogen peroxide, carbohydrate biosynthetic process, response to heat;C:cellular_component unknown;PMFVBO C.G. S.X.
0.30 4e-26 119 At1g60470 842342 AtGolS4 (Arabidopsis thaliana galactinol synthase 4) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO C.G. S.X.
0.10 6e-19 95 At5g23790 832444 AtGolS5 (Arabidopsis thaliana galactinol synthase 5) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFBVO C.G. S.X.
0.13 6e-13 75 At5g30500 833137 galactinol synthase, putative F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO C.G. S.X.
0.06 3e-5 50 At1g60450 842340 AtGolS7 (Arabidopsis thaliana galactinol synthase 7) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO C.G. S.X.
0.09 1e-4 48 At4g26250 828731 AtGolS6 (Arabidopsis thaliana galactinol synthase 6) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFBVO C.G. S.X.
0.02 5e-1 36 At4g08310 826385 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.03 5e-1 36 At3g22090 821771 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 2e-23 111 Glycine max Gma.5637.1.S1_at AY126715.1 galactinol synthase - 4e-24 At2g47180 AtGolS1 (Arabidopsis thaliana galactinol synthase 1) C.G. S.X.
0.34 8e-20 97 Hordeum vulgare Contig3812_at Contig3812 - - 2e-19 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) C.G. S.X.
0.28 5e-24 113 Oryza sativa Os07g0687900 D26537.1 - WSI76 protein induced by water stress 4e-24 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) C.G. S.X.
0.24 2e-13 77 Populus trichocarpa PtpAffx.209096.1.S1_at pmrna17988 hypothetical protein - 3e-27 At1g60470 AtGolS4 (Arabidopsis thaliana galactinol synthase 4) C.G. S.X.
0.22 2e-16 87 Triticum aestivum TaAffx.17365.1.S1_at CK206695 - - 1e-14 At1g56600 AtGolS2 (Arabidopsis thaliana galactinol synthase 2) C.G. S.X.
0.36 1e-26 119 Vitis vinifera 1621902_at CB345928 hypothetical protein LOC100255485 - 4e-26 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) C.G. S.X.
0.15 1e-5 50 Zea mays Zm.12202.1.A1_at BG549493 Galactinol synthase 1 - 3e-5 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
C GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00022 Biosynthesis and metabolism of sucrose
00359 Glucosyltransferase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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