Gene omics information

Query gene ID At1g09340
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At1g09340837455CRB (CHLOROPLAST RNA BINDING)Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.S.X.H.G.
0.8089.8At5g36700833635PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)F:phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOMFAPS.X.H.G.
0.7586.9At1g32060840098PRK (PHOSPHORIBULOKINASE)F:protein binding, phosphoribulokinase activity, ATP binding;P:response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation, biosynthetic process;C:in 8 components;BPOMFAVS.X.H.G.
0.7586.9At3g55800824746SBPASE (sedoheptulose-bisphosphatase)Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type.S.X.H.G.
0.7385.5At3g54050824572fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putativeF:fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity;P:response to cold, fructose metabolic process;C:apoplast, stromule, chloroplast stroma, chloroplast;BOMPFAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.198.5GSM131263AtGen_6-1211_Cold(4°C)-Shoots-1.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)
5.798.4GSM131255AtGen_6-0611_Control-Shoots-24.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)
5.698.4GSM131256AtGen_6-0612_Control-Shoots-24.0h_Rep2GSE5620AtGenExpress: Stress Treatments (Control plants)
5.598.3GSM131251AtGen_6-0511_Control-Shoots-12.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)
5.398.3GSM131467AtGen_6-9611_Heatstress(3h)+21hrecovery-Shoots-24.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.026e-136At5g58784835994dehydrodolichyl diphosphate synthaseF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMPC.G.S.X.
0.016e-136At3g04960819656-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.016e-136At2g25470817085AtRLP21 (Receptor Like Protein 21)F:protein binding;P:signal transduction;C:chloroplast;PMOBFAVC.G.S.X.
0.012e+034At5g14310831281AtCXE16 (Arabidopsis thaliana carboxyesterase 16)F:hydrolase activity;P:metabolic process;C:endomembrane system;BOPFMAVC.G.S.X.
0.012e+034At4g34900829642XDH2 (XXANTHINE DEHYDROGENASE 2)F:in 8 functions;P:allantoin biosynthetic process;C:cellular_component unknown;BOMAPFC.G.S.X.
0.022e+034At4g00840826193zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFPC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.478e-38159Glycine maxGma.17726.1.S1_atBE820041--3e-37At1g09340CRB (CHLOROPLAST RNA BINDING)C.G.S.X.
0.251e-963Hordeum vulgareContig1760_s_atContig1760--2e-9At1g09340CRB (CHLOROPLAST RNA BINDING)C.G.S.X.
0.323e-1067Oryza sativaOs12g0420200CB652532-38 kDa ribosome-associated protein1e+0At1g31250proline-rich family proteinC.G.S.X.
0.521e-54214Populus trichocarpaPtp.2327.1.A1_atCV280155hypothetical protein-1e-54At1g09340CRB (CHLOROPLAST RNA BINDING)C.G.S.X.
0.221e-861Triticum aestivumTa.1983.1.S1_atCD884181--1e-8At1g09340CRB (CHLOROPLAST RNA BINDING)C.G.S.X.
0.172e-22105Vitis vinifera1621301_atCB341732hypothetical protein LOC100261308-4e-22At1g09340CRB (CHLOROPLAST RNA BINDING)C.G.S.X.
0.265e-1581Zea maysZm.7905.1.S1_atBM078113hypothetical protein LOC100193292-6e-15At1g09340CRB (CHLOROPLAST RNA BINDING)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
XGO:0006364Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0007623Any biological process in an organism that recurs with a regularity of approximately 24 hours.
XGO:0009658A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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