CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g09340

Gene name CRB (CHLOROPLAST RNA BINDING)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At1g09340 837455 CRB (CHLOROPLAST RNA BINDING) Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes. S.X. H.G.
0.80 89.8 At5g36700 833635 PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1) F:phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOMFAP S.X. H.G.
0.75 86.9 At1g32060 840098 PRK (PHOSPHORIBULOKINASE) F:protein binding, phosphoribulokinase activity, ATP binding;P:response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation, biosynthetic process;C:in 8 components;BPOMFAV S.X. H.G.
0.75 86.9 At3g55800 824746 SBPASE (sedoheptulose-bisphosphatase) Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type. S.X. H.G.
0.73 85.5 At3g54050 824572 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative F:fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity;P:response to cold, fructose metabolic process;C:apoplast, stromule, chloroplast stroma, chloroplast;BOMPFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.1 98.5 GSM131263 AtGen_6-1211_Cold(4°C)-Shoots-1.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
5.7 98.4 GSM131255 AtGen_6-0611_Control-Shoots-24.0h_Rep1 GSE5620 AtGenExpress: Stress Treatments (Control plants)
5.7 98.4 E-TABM-18-raw-cel-489543590
5.7 98.4 E-TABM-18-raw-cel-489543037
5.6 98.4 E-TABM-18-raw-cel-489543005
5.6 98.4 GSM131256 AtGen_6-0612_Control-Shoots-24.0h_Rep2 GSE5620 AtGenExpress: Stress Treatments (Control plants)
5.5 98.3 GSM131251 AtGen_6-0511_Control-Shoots-12.0h_Rep1 GSE5620 AtGenExpress: Stress Treatments (Control plants)
5.3 98.3 GSM131467 AtGen_6-9611_Heatstress(3h)+21hrecovery-Shoots-24.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
5.3 98.3 E-TABM-18-raw-cel-489543526
5.3 98.3 E-TABM-18-raw-cel-489543138
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 6e-1 36 At5g58784 835994 dehydrodolichyl diphosphate synthase F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP C.G. S.X.
0.01 6e-1 36 At3g04960 819656 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 6e-1 36 At2g25470 817085 AtRLP21 (Receptor Like Protein 21) F:protein binding;P:signal transduction;C:chloroplast;PMOBFAV C.G. S.X.
0.01 2e+0 34 At5g14310 831281 AtCXE16 (Arabidopsis thaliana carboxyesterase 16) F:hydrolase activity;P:metabolic process;C:endomembrane system;BOPFMAV C.G. S.X.
0.01 2e+0 34 At4g34900 829642 XDH2 (XXANTHINE DEHYDROGENASE 2) F:in 8 functions;P:allantoin biosynthetic process;C:cellular_component unknown;BOMAPF C.G. S.X.
0.02 2e+0 34 At4g00840 826193 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 8e-38 159 Glycine max Gma.17726.1.S1_at BE820041 - - 3e-37 At1g09340 CRB (CHLOROPLAST RNA BINDING) C.G. S.X.
0.25 1e-9 63 Hordeum vulgare Contig1760_s_at Contig1760 - - 2e-9 At1g09340 CRB (CHLOROPLAST RNA BINDING) C.G. S.X.
0.32 3e-10 67 Oryza sativa Os12g0420200 CB652532 - 38 kDa ribosome-associated protein 1e+0 At1g31250 proline-rich family protein C.G. S.X.
0.52 1e-54 214 Populus trichocarpa Ptp.2327.1.A1_at CV280155 hypothetical protein - 1e-54 At1g09340 CRB (CHLOROPLAST RNA BINDING) C.G. S.X.
0.22 1e-8 61 Triticum aestivum Ta.1983.1.S1_at CD884181 - - 1e-8 At1g09340 CRB (CHLOROPLAST RNA BINDING) C.G. S.X.
0.17 2e-22 105 Vitis vinifera 1621301_at CB341732 hypothetical protein LOC100261308 - 4e-22 At1g09340 CRB (CHLOROPLAST RNA BINDING) C.G. S.X.
0.26 5e-15 81 Zea mays Zm.7905.1.S1_at BM078113 hypothetical protein LOC100193292 - 6e-15 At1g09340 CRB (CHLOROPLAST RNA BINDING) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
X GO:0006364 Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
X GO:0007623 Any biological process in an organism that recurs with a regularity of approximately 24 hours.
X GO:0009658 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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