CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g09270

Gene name IMPA-4 (IMPORTIN ALPHA ISOFORM 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At1g09270 837448 IMPA-4 (IMPORTIN ALPHA ISOFORM 4) Protein interacts with Agrobacterium proteins VirD2 and VirE2. S.X. H.G.
0.57 73.8 At4g04910 825830 NSF (N-ethylmaleimide sensitive factor) N-ethylmaleimide sensitive factor S.X. H.G.
0.50 65.3 At2g14835 815972 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPO S.X. H.G.
0.33 38.1 At5g11710 831043 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related EPSIN1 plays an important role in the vacuolar trafficking of soluble proteins at the trans-Golgi network via its interaction with gamma-ADR, VTI11, VSR1, and clathrin. Associated with actin filaments and with the Golgi complex. Expressed in most tissues. S.X. H.G.
0.15 7.8 At4g14160 827055 transport protein, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.2 99.6 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
18.4 99.5 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
14.0 99.4 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
13.1 99.4 GSM184487 Epidermis&Cortex root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.3 99.1 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.1 99.1 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
8.4 99.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
7.9 98.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
7.5 98.8 GSM133118 RIKEN-YAMAUCHI1B GSE5687 AtGenExpress: Different temperature treatment of seeds
7.4 98.8 GSM184891 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.25 1e-8 61 At4g16143 827302 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.11 9e-7 56 At4g02150 827472 MOS6 (MODIFIER OF SNC1, 6) Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.21 3e-6 54 At3g06720 819857 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) Encodes importin alpha involved in nuclear import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.11 3e-3 44 At1g02690 839517 IMPA-6 (IMPORTIN ALPHA ISOFORM 6) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.01 1e-2 42 At5g03070 831675 IMPA-9 (IMPORTIN ALPHA ISOFORM 9) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 2e-8 61 Glycine max Gma.7528.2.S1_at BM891312 - - 3e-49 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) C.G. S.X.
0.20 1e-19 97 Hordeum vulgare Contig4129_at Contig4129 - - 9e-26 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
0.22 2e-9 65 Oryza sativa Os01g0253300 AB004660.1 - Importin alpha 2 6e-24 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
0.45 3e-75 284 Populus trichocarpa PtpAffx.125423.1.S1_at DN488411 hypothetical protein - 1e-75 At1g09270 IMPA-4 (IMPORTIN ALPHA ISOFORM 4) C.G. S.X.
0.19 4e-15 83 Triticum aestivum Ta.28018.1.S1_at CK159354 - - 2e-27 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) C.G. S.X.
0.05 1e-12 73 Vitis vinifera 1616651_at BQ796747 hypothetical protein LOC100263083 - 1e-12 At1g09270 IMPA-4 (IMPORTIN ALPHA ISOFORM 4) C.G. S.X.
0.23 2e-11 69 Zea mays Zm.4898.2.A1_at AY108183.1 - - 6e-11 At1g09270 IMPA-4 (IMPORTIN ALPHA ISOFORM 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0080034 A change in the state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the formation of an abnormal mass of cells in the host organism, induced by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.
X GO:0030581 The directed movement of a symbiont's proteins within a cell of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
C GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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