CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g09090

Gene name ATRBOHB (respiratory burst oxidase homolog B)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.77 88.0 At1g09090 837430 ATRBOHB (respiratory burst oxidase homolog B) F:in 7 functions;P:response to heat, defense response;C:integral to membrane, membrane;MPFOBA S.X. H.G.
0.93 96.4 At2g27370 817280 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At2g39430 818528 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO S.X. H.G.
0.93 96.4 At5g06200 830507 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At1g71740 843504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At2g32300 817791 UCC1 (UCLACYANIN 1) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. S.X. H.G.
0.91 95.6 At5g57620 835866 MYB36 (myb domain protein 36) Encodes a putative transcription factor (MYB36). S.X. H.G.
0.89 94.6 At3g11550 820328 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At4g20140 827760 GSO1 (GASSHO1) Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis. S.X. H.G.
0.88 94.0 At4g21340 827884 B70 F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus, intracellular;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
282.0 100.0 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
223.1 100.0 GSM133973 Birnbaum_1-3_src5-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
181.7 100.0 GSM184898 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
121.9 99.9 GSM266672 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
112.1 99.9 GSM184899 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
111.6 99.9 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
92.8 99.9 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
89.4 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
88.4 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
84.8 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 4e-9 63 At5g47910 834842 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. C.G. S.X.
0.07 2e-7 57 At5g51060 835179 RHD2 (ROOT HAIR DEFECTIVE 2) RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx. C.G. S.X.
0.03 6e-5 50 At5g07390 830630 ATRBOHA (respiratory burst oxidase homolog A) F:calcium ion binding;P:defense response;C:intrinsic to plasma membrane;MFPOBA C.G. S.X.
0.04 2e-4 48 At4g11230 826725 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 6 functions;P:oxidation reduction;C:integral to membrane, membrane;MFPBOA C.G. S.X.
0.03 4e-3 44 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA C.G. S.X.
0.01 4e-3 44 At3g45810 823724 ferric reductase-like transmembrane component family protein F:in 8 functions;P:oxidation reduction;C:membrane;MPFOBA C.G. S.X.
0.02 4e-3 44 At1g19230 838506 respiratory burst oxidase protein E (RbohE) / NADPH oxidase F:in 7 functions;P:defense response;C:integral to membrane, membrane;MFPBOA C.G. S.X.
0.01 1e-2 42 At1g68940 843228 armadillo/beta-catenin repeat protein-related / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBFV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 8e-2 40 Glycine max GmaAffx.71361.1.S1_at BI701521 - - 1e-9 At5g07390 ATRBOHA (respiratory burst oxidase homolog A) C.G. S.X.
0.04 3e-8 59 Hordeum vulgare Contig7197_at Contig7197 - - 5e-15 At3g45810 ferric reductase-like transmembrane component family protein C.G. S.X.
0.04 2e-3 46 Oryza sativa Os12g0541300 9640.m03446 - Respiratory burst oxidase homolog 2e-3 At1g09090 ATRBOHB (respiratory burst oxidase homolog B) C.G. S.X.
0.10 3e-7 57 Populus trichocarpa PtpAffx.219714.1.S1_at pmrna35717 hypothetical protein - 6e-33 At1g19230 respiratory burst oxidase protein E (RbohE) / NADPH oxidase C.G. S.X.
0.03 6e-2 40 Triticum aestivum TaAffx.64682.1.S1_at CA652881 - - 3e-2 At5g47910 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1621361_at CB975111 - - 2e-1 Atmg00630 - C.G. S.X.
0.05 1e-4 48 Zea mays Zm.4309.1.S1_at AW052961 respiratory burst oxidase protein B - 1e-25 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009845 The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis.
X GO:0009408 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
S GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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