CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g08940

Gene name phosphoglycerate/bisphosphoglycerate mutase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.45 58.3 At1g08940 837415 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPAM S.X. H.G.
0.39 48.4 At1g18390 838420 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.31 33.8 At4g11850 826791 PLDGAMMA1 phospholipase D (gamma) S.X. H.G.
0.26 24.4 At2g39660 818549 BIK1 (BOTRYTIS-INDUCED KINASE1) Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens. S.X. H.G.
0.26 24.4 At2g02220 814753 PSKR1 (PHYTOSULFOKIN RECEPTOR 1) Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). S.X. H.G.
0.19 12.7 At4g04960 825837 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.19 12.7 At1g63720 842676 - F:unknown;P:unknown;C:unknown;MPFOVB S.X. H.G.
0.16 8.8 At5g18490 831967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBO S.X. H.G.
0.16 8.8 At4g23270 828426 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.16 8.8 At4g38540 830011 monooxygenase, putative (MO2) F:monooxygenase activity;P:metabolic process;C:unknown;BFOPAM S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
135.0 99.9 E-MEXP-546-raw-cel-863289532
122.1 99.9 E-MEXP-546-raw-cel-863289476
106.9 99.9 E-MEXP-546-raw-cel-863289424
44.0 99.8 E-MEXP-711-raw-cel-1563002902
39.5 99.8 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
36.1 99.7 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
32.4 99.7 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
29.8 99.7 GSM133810 Diamond_A-3-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
29.7 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
28.5 99.7 GSM142644 MC002_ATH1_A8.1-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 1e-10 67 At3g05170 819681 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPMA C.G. S.X.
0.02 3e-2 40 At3g62500 825424 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e-2 40 At3g61740 825347 SDG14 (SET DOMAIN PROTEIN 14) F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MOPFBA C.G. S.X.
0.01 2e+0 34 At5g59010 836018 protein kinase-related F:protein tyrosine kinase activity, binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMBOFVA C.G. S.X.
0.02 2e+0 34 At5g27310 832789 - F:molecular_function unknown;P:transcription;C:plasma membrane;OMPBF C.G. S.X.
0.01 2e+0 34 At3g16760 820928 tetratricopeptide repeat (TPR)-containing protein F:binding;P:unknown;C:plasma membrane;OMBFPVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-3 42 Glycine max PsAffx.psMA015xF03f_s_at PsAffx.psMA015xF03f - - 3e-3 At1g08940 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.02 8e-1 34 Hordeum vulgare Contig9875_at Contig9875 - - 9e-3 At3g29100 VTI13 C.G. S.X.
0.07 3e-3 44 Oryza sativa Os05g0141700 AK065644.1 - Phosphoglycerate/bisphosphoglycerate mutase familyprotein 4e-8 At3g05170 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.07 6e-4 46 Populus trichocarpa PtpAffx.222762.1.S1_at pmrna40401 hypothetical protein - 4e-7 At3g05170 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.38539.1.A1_at BJ220364 - - 3e-1 At1g08940 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.04 1e-1 36 Vitis vinifera 1620262_at CB349791 - - 3e+0 At4g14272 - C.G. S.X.
0.07 3e-6 52 Zea mays Zm.13814.1.S1_at AY104654.1 hypothetical protein LOC100273186 - 1e-5 At1g08940 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage