Gene omics information

Query gene ID At1g08860
Gene name BON3 (BONZAI 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g08860837408BON3 (BONZAI 3)Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death.S.X.H.G.
0.8894.0At2g31690817725lipase class 3 family proteinencodes a triacylglycerol lipase located in plastoglobuli and involved in the degradation of triacylglycerol. It also has impact on leaf senescence and maintaining the structural integrity of thylakoids.S.X.H.G.
0.8693.1At2g22760816806basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMAS.X.H.G.
0.8391.4At3g23220821900DNA binding / transcription factorencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.S.X.H.G.
0.7788.0At2g32140817773transmembrane receptorF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBOS.X.H.G.
0.7284.8At5g24110832476WRKY30member of WRKY Transcription Factor; Group IIIS.X.H.G.
0.7083.5At5g01560830345LECRKA4.3 (LECTIN RECEPTOR KINASE A4.3)Encodes LecRKA4.3, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.S.X.H.G.
0.6982.9At2g36440818218unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6579.6At5g05300830412unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6579.6At1g14540838016anionic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
875.0100.0E-MEXP-807-raw-cel-1173273252
779.7100.0E-MEXP-807-raw-cel-1173273144
463.0100.0E-MEXP-807-raw-cel-1173273116
424.3100.0E-MEXP-807-raw-cel-1173273170
312.6100.0E-MEXP-807-raw-cel-1173273060
275.0100.0GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
249.9100.0E-MEXP-807-raw-cel-1173273088
234.7100.0E-MEXP-807-raw-cel-1173273223
184.0100.0E-MEXP-807-raw-cel-1173273196
81.199.9GSM128719Pieterse_1-5_avrPstDC3000-12h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attack
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.041e-346At5g07300830621BON2 (BONZAI 2)Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms.C.G.S.X.
0.031e-242At5g61900836311BON1 (BONZAI 1)Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response.C.G.S.X.
0.019e-136At4g322725008177-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBC.G.S.X.
0.019e-136At1g27370839626squamosa promoter-binding protein-like 10 (SPL10)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e+034Glycine maxGmaAffx.64180.1.S1_atBI893447--3e-8At5g61900BON1 (BONZAI 1)C.G.S.X.
0.027e+032Hordeum vulgareHVSMEm0017N09r2_atHVSMEm0017N09r2--4e+0At4g25720QC (GLUTAMINYL CYCLASE)C.G.S.X.
0.102e-346Oryza sativaOs05g03733009633.m02818-C2 domain containing protein9e-4At1g08860BON3 (BONZAI 3)C.G.S.X.
0.295e-37157Populus trichocarpaPtpAffx.210941.1.S1_atpmrna21501hypothetical protein-3e-37At1g08860BON3 (BONZAI 3)C.G.S.X.
0.064e-344Triticum aestivumTa.1560.1.S1_atBE445772--3e-3At1g08860BON3 (BONZAI 3)C.G.S.X.
0.024e+032Vitis vinifera1622357_s_atCF569217.1--3e-1At2g37610unknown proteinC.G.S.X.
0.014e-136Zea maysZm.2954.1.A1_atAW091498--5e-1At3g62670ARR20 (ARABIDOPSIS RESPONSE REGULATOR 20)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0060548Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
NGO:0010186Any process that activates or increases the frequency, rate or extent of cellular defense response.
NGO:0019725Any process involved in the maintenance of an internal equilibrium at the level of the cell.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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