CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g08730

Gene name XIC

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g08730 837394 XIC Class XI myosin gene S.X. H.G.
0.75 86.9 At1g20080 838597 SYTB F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO S.X. H.G.
0.74 86.1 At1g52570 841689 PLDALPHA2 (phosphlipase d alpha 2) member of C2-PLD subfamily S.X. H.G.
0.73 85.5 At1g54560 841898 XIE member of Myosin-like proteins S.X. H.G.
0.64 78.9 At2g30290 817579 vacuolar sorting receptor, putative F:calcium ion binding;P:protein targeting to vacuole;C:integral to plasma membrane, Golgi transport complex;MOPBA S.X. H.G.
0.60 75.7 At3g03080 821128 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOFMPA S.X. H.G.
0.47 61.2 At5g66020 836732 ATSAC1B (SUPPRESSOR OF ACTIN 1B) Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do. non-consensus AT donor splice site at exon 7, TA donor splice site at exon 10, AT acceptor splice at exon 13. S.X. H.G.
0.45 58.3 At4g01470 828051 TIP1 Encodes AtTIP1;3, functions as water and urea channels in pollen. S.X. H.G.
0.44 57.2 At1g22730 838879 MA3 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.40 50.8 At1g26320 839174 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
199.9 100.0 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
198.3 100.0 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
194.3 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
190.9 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
161.9 99.9 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
93.6 99.9 GSM106923 opr3_OPDA_2 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
82.7 99.9 GSM106825 opr3_0 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
77.8 99.9 GSM106913 opr3_JA_8 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
76.5 99.9 GSM106907 opr3_JA_0.5 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
72.6 99.9 GSM106827 opr3_0 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.85 0 3025 At1g54560 841898 XIE member of Myosin-like proteins C.G. S.X.
0.27 6e-75 284 At1g17580 838333 MYA1 (MYOSIN 1) Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development. C.G. S.X.
0.11 1e-38 163 At2g33240 817886 XID member of Myosin-like proteins C.G. S.X.
0.17 4e-36 155 At2g31900 817748 XIF Encodes an novel myosin isoform. C.G. S.X.
0.32 1e-35 153 At5g20490 832171 XIK Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant. C.G. S.X.
0.09 5e-32 141 At1g04600 839480 XIA (MYOSIN XI A) member of Myosin-like proteins C.G. S.X.
0.13 3e-27 125 At3g58160 824985 XIJ Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants C.G. S.X.
0.12 3e-24 115 At1g04160 839246 XIB (MYOSIN XI B) Encodes a member of the type XI myosin protein family involved in root hair elongation. C.G. S.X.
0.13 8e-22 107 At4g28710 828991 XIH member of Myosin-like proteins C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-14 83 Glycine max Gma.11014.1.S1_at CA937002 - - 2e-76 At5g20490 XIK C.G. S.X.
0.15 2e-8 61 Hordeum vulgare Contig13685_at Contig13685 - - 2e-8 At1g08730 XIC C.G. S.X.
0.43 7e-113 410 Oryza sativa Os06g0488200 AK120774.1 - Myosin 4e-113 At1g08730 XIC C.G. S.X.
0.57 0 737 Populus trichocarpa PtpAffx.211006.1.S1_at pmrna21625 hypothetical protein - 0 At1g08730 XIC C.G. S.X.
0.10 4e-14 81 Triticum aestivum Ta.853.1.S1_at AJ601815 - - 7e-10 At5g20470 myosin, putative C.G. S.X.
0.05 8e-16 85 Vitis vinifera 1614636_at CF211282 hypothetical protein LOC100243893 - 4e-41 At5g20490 XIK C.G. S.X.
0.20 2e-29 131 Zea mays Zm.442.1.S1_at AF104924.2 unconventional myosin heavy chain - 5e-48 At5g20490 XIK C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0030048 Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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