Gene omics information

Query gene ID At1g08500
Gene name plastocyanin-like domain-containing protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4253.9At1g08500837371plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PS.X.H.G.
0.5368.6At4g14380827082unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMS.X.H.G.
0.5267.4At5g60660836187PIP2F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAVS.X.H.G.
0.4457.2At1g32170840109XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)xyloglucan endotransglycosylase-related protein (XTR4)S.X.H.G.
0.4253.9At4g22460828341protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.4050.8At2g19660816485DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOS.X.H.G.
0.4050.8At5g37790833757protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.3846.7At3g14370820658WAG2The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.S.X.H.G.
0.3541.6At5g65390836664AGP7F:unknown;P:unknown;C:anchored to membrane;BMOPFVAS.X.H.G.
0.3338.1At3g05920819761heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
123.599.9GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
116.899.9GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
90.699.9GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
89.699.9GSM133985Birnbaum_1-15_StageIII-4_Rep4_ATH1GSE5749A gene expression map of the Arabidopsis root
88.599.9GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
85.999.9GSM226536L6SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
84.799.9GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
71.899.9GSM266671Arabidopsis, root cells, cortex, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
68.799.9GSM265423Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
65.299.8GSM266670Arabidopsis, root cells, cortex, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-240At1g61840842481DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMC.G.S.X.
0.033e-136At1g21900838792emp24/gp25L/p24 family proteinF:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFOPC.G.S.X.
0.013e-136At1g22770838883GI (GIGANTEA)Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Located in the nucleus. Regulates several developmental processes, including photoperiod-mediated flowering, phytochrome B signaling, circadian clock, carbohydrate metabolism, and cold stress response. The gene's transcription is controlled by the circadian clock and it is post-transcriptionally regulated by light and dark. Forms a complex with FKF1 on the CO promoter to regulate CO expression.C.G.S.X.
0.041e+034At5g191516241041unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.011e+034At5g16720831534unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOFBPAVC.G.S.X.
0.021e+034At5g24520832523TTG1 (TRANSPARENT TESTA GLABRA 1)Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes.C.G.S.X.
0.021e+034At5g23240832388DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.078e-342Glycine maxGma.17747.1.S1_atBQ628554--8e-3At1g08500plastocyanin-like domain-containing proteinC.G.S.X.
0.034e-238Hordeum vulgareContig982_atContig982--2e-1At5g20520WAV2 (WAVY GROWTH 2)C.G.S.X.
0.077e-446Oryza sativaOs01g0281600AK062646.1-Plastocyanin-like domain containing protein6e-4At1g08500plastocyanin-like domain-containing proteinC.G.S.X.
0.101e-448Populus trichocarpaPtpAffx.728.2.A1_a_atCV282854hypothetical protein-1e-4At1g08500plastocyanin-like domain-containing proteinC.G.S.X.
0.054e-136Triticum aestivumTa.7796.1.S1_a_atBQ160701--5e-1At1g08500plastocyanin-like domain-containing proteinC.G.S.X.
0.031e-136Vitis vinifera1619839_s_atCF514944hypothetical protein LOC100251001-2e-1At4g25510unknown proteinC.G.S.X.
0.094e-238Zea maysZm.9840.1.A1_atCK826945--1e-1At1g08500plastocyanin-like domain-containing proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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