Gene omics information

Query gene ID At1g08450
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At1g08450837365CRT3 (CALRETICULIN 3)Encodes calreticulin CRT3.S.X.H.G.
1.00100.0At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseS.X.H.G.
0.8089.8At5g10380830902RING1Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.S.X.H.G.
0.8089.8At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOS.X.H.G.
0.7586.9At1g75040843842PR5 (PATHOGENESIS-RELATED GENE 5)Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.S.X.H.G.
0.6075.7At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
24.399.6GSM1330632526GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
24.099.6GSM250966mil4 with BTH treatment, biological rep3GSE9955MILDEW-INDUCED LESIONS 4 encodes a novel regulator of the salicylic acid defense response
23.099.6GSM250949mil4 overexpression line with BTH treatment, biological rep2GSE9956Expression profiling of the overexpression of MILDEW-INDUCED LESIONS 4
22.699.6GSM250950mil4 overexpression line with BTH treatment, biological rep3GSE9956Expression profiling of the overexpression of MILDEW-INDUCED LESIONS 4
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.056e-446At1g56340842087CRT1 (CALRETICULIN 1)Encodes calreticulin CRT1.C.G.S.X.
0.073e-344At1g09210837441calreticulin 2 (CRT2)F:unfolded protein binding, calcium ion binding;P:response to oxidative stress, response to salt stress;C:mitochondrion, endoplasmic reticulum, vacuole;MOFPBVAC.G.S.X.
0.044e-240At5g07340830625calnexin, putativeF:unfolded protein binding, calcium ion binding;P:protein folding;C:endoplasmic reticulum, plasma membrane, chloroplast, membrane;MOPFBVC.G.S.X.
0.024e-240At5g42510834258disease resistance-responsive family proteinF:molecular_function unknown;P:defense response;C:endomembrane system;PC.G.S.X.
0.024e-240At2g36650818237-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAVC.G.S.X.
0.012e-138At5g35790833559G6PD1 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1)Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is more prevalent in developing organs but absent in the root.C.G.S.X.
0.022e-138At4g39710830126immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.452e-54214Glycine maxGma.2715.1.S1_atCD393322--1e-54At1g08450CRT3 (CALRETICULIN 3)C.G.S.X.
0.231e-1997Hordeum vulgareContig2747_atContig2747--3e-19At1g08450CRT3 (CALRETICULIN 3)C.G.S.X.
0.231e-22109Oryza sativaOs05g0507300AK060834.1-Calreticulin 3 precursor7e-23At1g08450CRT3 (CALRETICULIN 3)C.G.S.X.
0.571e-110400Populus trichocarpaPtpAffx.206938.1.S1_s_atpmrna13764hypothetical protein-1e-110At1g08450CRT3 (CALRETICULIN 3)C.G.S.X.
0.192e-1997Triticum aestivumTa.14837.1.S1_atCA682925Calreticulin-3e-19At1g08450CRT3 (CALRETICULIN 3)C.G.S.X.
0.153e-1271Vitis vinifera1615290_atCD798746--5e-12At1g08450CRT3 (CALRETICULIN 3)C.G.S.X.
0.195e-1891Zea maysZm.15044.1.A1_atCF631612hypothetical protein LOC100193123-9e-18At1g08450CRT3 (CALRETICULIN 3)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010204A series of molecular signals that is activated during defense response and does not depend upon R-genes.
XGO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
XGO:0006457The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
XGO:0009626The rapid, localized death of plant cells in response to invasion by a pathogen.
XGO:0046283The chemical reactions and pathways involving anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins that occur in plants. They are responsible from most of the scarlet, purple, mauve and blue coloring in higher plants, especially of flowers.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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