CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g08320

Gene name bZIP family transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.59 74.7 At1g08320 837353 bZIP family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF S.X. H.G.
0.78 88.6 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.74 86.1 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO S.X. H.G.
0.68 82.2 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.67 81.6 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase S.X. H.G.
0.63 78.1 At3g45410 823679 lectin protein kinase family protein encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor. S.X. H.G.
0.62 77.3 At1g29280 839802 WRKY65 member of WRKY Transcription Factor; Group II-e S.X. H.G.
0.62 77.3 At2g35000 818064 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. S.X. H.G.
0.62 77.3 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA S.X. H.G.
0.59 74.7 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
110.1 99.9 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
99.5 99.9 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
78.5 99.9 GSM75516 slr-1 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
76.3 99.9 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
57.9 99.8 E-MEXP-828-raw-cel-1156922684
49.7 99.8 E-MEXP-828-raw-cel-1156922572
48.6 99.8 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
48.3 99.8 GSM265473 Arabidopsis, whole roots, -Fe, 72 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
48.1 99.8 GSM75512 Col-0 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
46.8 99.8 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 3e-6 54 At5g06950 830586 AHBP-1B Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment. C.G. S.X.
0.07 3e-6 54 At1g22070 838812 TGA3 Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-10 67 Glycine max Gma.6642.1.A1_at BE610052 transcription factor bZIP42 - 1e-10 At1g08320 bZIP family transcription factor C.G. S.X.
0.03 6e-6 52 Hordeum vulgare Contig16432_at Contig16432 - - 1e-2 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) C.G. S.X.
0.08 2e-2 42 Oryza sativa Os05g0492000 9633.m03865 - - 5e-1 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) C.G. S.X.
0.22 5e-12 73 Populus trichocarpa PtpAffx.204392.1.S1_at pmrna8622 hypothetical protein - 3e-12 At1g08320 bZIP family transcription factor C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.88821.1.S1_at CA638506 - - 3e-9 At5g06950 AHBP-1B C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1614980_at CF213518 hypothetical protein LOC100247199 - 8e-8 At4g24220 VEP1 (VEIN PATTERNING 1) C.G. S.X.
0.02 2e-2 40 Zea mays Zm.19119.1.A1_at CO521073 hypothetical protein LOC100274089 - 1e-11 At1g68640 PAN (PERIANTHIA) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage