CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g08190

Gene name vacuolar assembly protein, putative (VPS41)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g08190 837340 vacuolar assembly protein, putative (VPS41) F:protein binding, binding, nucleotide binding, zinc ion binding;P:intracellular protein transport, vesicle-mediated transport;C:unknown;MOFPVBA S.X. H.G.
0.33 38.1 At4g13020 826915 MHK Encodes a member of the cdc2+ family of protein kinases MHK. Similar to the mak genes of rats. mak encodes a protein kinase that may play a role in spermatogenesis. S.X. H.G.
0.32 35.7 At4g39080 830063 VHA-A3 (VACUOLAR PROTON ATPASE A3) Vacuolar proton ATPase subunit VHA-a isoform 3. Localized in the tonoplast. S.X. H.G.
0.12 4.9 At3g08930 820042 - F:unknown;P:unknown;C:endomembrane system;MOFP S.X. H.G.
0.03 0.6 At4g36630 829815 EMB2754 (EMBRYO DEFECTIVE 2754) F:small GTPase regulator activity, binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFOP S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.6 99.2 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.5 99.2 GSM131170 AtGen_D-2_1-FL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
10.3 99.2 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
10.1 99.2 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
9.6 99.1 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
9.2 99.1 GSM131173 AtGen_D-5_1-BL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
8.5 99.0 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.4 99.0 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.3 99.0 GSM131203 AtGen_D-37_3-BL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
8.3 99.0 GSM131176 AtGen_D-8_1-WL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-4 50 At1g68330 843162 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.02 2e-3 46 At4g27310 828839 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;MOFPBVA C.G. S.X.
0.02 2e-3 46 At3g25100 822101 CDC45 (cell division cycle 45) Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45 C.G. S.X.
0.02 6e-3 44 At5g19260 832046 unknown protein F:unknown;P:unknown;C:unknown;MOFPBV C.G. S.X.
0.01 6e-3 44 At4g30020 829125 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM C.G. S.X.
0.02 6e-3 44 At3g09360 820092 RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding F:in 6 functions;P:translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex, nucleus;MOFBPAV C.G. S.X.
0.02 6e-3 44 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 2e-2 42 At5g25590 832634 - F:unknown;P:N-terminal protein myristoylation;C:unknown;MOFPBVA C.G. S.X.
0.01 2e-2 42 At5g63650 836485 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 2e-34 149 Glycine max GmaAffx.71007.1.S1_at BM187697 - - 4e-35 At1g08190 vacuolar assembly protein, putative (VPS41) C.G. S.X.
0.02 5e-2 40 Hordeum vulgare EBro08_SQ003_C15_at EBro08_SQ003_C15 - - 2e-2 At3g21850 ASK9 (ARABIDOPSIS SKP1-LIKE 9) C.G. S.X.
0.15 4e-24 115 Oryza sativa Os04g0195000 AK073992.1 - Vacuolar assembly protein VPS41 homolog 2e-24 At1g08190 vacuolar assembly protein, putative (VPS41) C.G. S.X.
0.16 4e-48 194 Populus trichocarpa PtpAffx.105751.1.S1_at CK094445 hypothetical protein - 9e-49 At1g08190 vacuolar assembly protein, putative (VPS41) C.G. S.X.
0.02 1e-1 40 Triticum aestivum TaAffx.29437.1.S1_at CA642941 - - 9e+0 At4g14305 - C.G. S.X.
0.09 1e-29 131 Vitis vinifera 1610368_at CA809392 hypothetical protein LOC100244792 - 1e-29 At1g08190 vacuolar assembly protein, putative (VPS41) C.G. S.X.
0.09 3e-9 63 Zea mays Zm.6920.1.A1_at CK348056 - - 3e-9 At1g08190 vacuolar assembly protein, putative (VPS41) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
L GO:0016192 The directed movement of substances into, out of or within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage