CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g08100

Gene name NRT2.2 (NITRATE TRANSPORTER 2.2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g08100 837328 NRT2.2 (NITRATE TRANSPORTER 2.2) Encodes a high-affinity nitrate transporter. S.X. H.G.
0.40 50.8 At1g63560 842661 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.10 3.4 At3g29430 822604 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV S.X. H.G.
0.03 0.6 At1g33900 840287 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative F:GTP binding;P:response to bacterium;C:unknown;MPOBFV S.X. H.G.
0.01 0.2 At3g32040 822957 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
809.6 100.0 GSM157306 Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
667.6 100.0 GSM157305 Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
199.7 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
179.5 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
178.3 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
177.5 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
173.3 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
173.2 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
163.8 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
162.2 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 0 1883 At1g08090 837327 ATNRT2:1 (NITRATE TRANSPORTER 2:1) High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake. C.G. S.X.
0.37 3e-46 186 At5g60770 836198 ATNRT2.4 member of High affinity nitrate transporter family C.G. S.X.
0.10 3e-3 44 At3g45060 823641 ATNRT2.6 member of High affinity nitrate transporter family C.G. S.X.
0.06 5e-2 40 At5g60780 836199 ATNRT2.3 member of High affinity nitrate transporter family C.G. S.X.
0.01 2e-1 38 At2g03000 814829 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBVA C.G. S.X.
0.07 2e-1 38 At1g12940 837852 ATNRT2.5 (nitrate transporter2.5) member of High affinity nitrate transporter family C.G. S.X.
0.01 8e-1 36 At4g02070 828147 MSH6 (MUTS HOMOLOG 6) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex. C.G. S.X.
0.01 8e-1 36 At4g20710 827818 - Pseudogene of AT4G20710; DUF-26 IntrePro domain family protein C.G. S.X.
0.01 8e-1 36 At1g07750 837290 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 2e-39 165 Glycine max Gma.8482.1.S1_at AF047718.1 NRT2 protein - 1e-27 At5g60770 ATNRT2.4 C.G. S.X.
0.11 7e-9 61 Hordeum vulgare Contig26512_at Contig26512 - - 2e-13 At1g08090 ATNRT2:1 (NITRATE TRANSPORTER 2:1) C.G. S.X.
0.11 7e-9 63 Oryza sativa Os02g0112600 AK109733.1 - Membrane transporter 2e-8 At1g08090 ATNRT2:1 (NITRATE TRANSPORTER 2:1) C.G. S.X.
0.08 5e-15 83 Populus trichocarpa Ptp.5713.2.S1_a_at AJ557585.1 high affinity nitrate transporter - 7e-6 At5g60770 ATNRT2.4 C.G. S.X.
0.15 2e-11 71 Triticum aestivum TaAffx.64687.1.S1_at BJ281060 - - 1e-12 At5g60780 ATNRT2.3 C.G. S.X.
0.02 6e-2 38 Vitis vinifera 1618777_at CA809083 hypothetical protein LOC100241782 - 5e-25 At5g53970 aminotransferase, putative C.G. S.X.
0.05 1e-3 44 Zea mays Zm.10344.1.S1_at AY129953.1 nrt2.1 protein - 2e-4 At1g08090 ATNRT2:1 (NITRATE TRANSPORTER 2:1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0015706 The directed movement of nitrate into, out of, within or between cells.
X GO:0048527 The process whose specific outcome is the progression of the lateral root over time, from its formation to the mature structure. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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