CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g08090

Gene name ATNRT2:1 (NITRATE TRANSPORTER 2:1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g08090 837327 ATNRT2:1 (NITRATE TRANSPORTER 2:1) High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake. S.X. H.G.
0.82 90.9 At1g70880 843425 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At1g49860 841409 ATGSTF14 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.77 88.0 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. S.X. H.G.
0.75 86.9 At5g37450 833722 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.74 86.1 At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA S.X. H.G.
0.50 65.3 At4g14630 827113 GLP9 (GERMIN-LIKE PROTEIN 9) germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell. S.X. H.G.
0.46 59.8 At1g11540 837697 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBAP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
200.3 100.0 E-MEXP-828-raw-cel-1156922438
190.9 100.0 E-MEXP-828-raw-cel-1156922809
185.1 100.0 E-MEXP-828-raw-cel-1156922386
165.6 100.0 E-MEXP-828-raw-cel-1156922968
161.0 99.9 E-MEXP-828-raw-cel-1156922416
152.6 99.9 E-MEXP-828-raw-cel-1156922794
144.5 99.9 E-MEXP-828-raw-cel-1156922684
139.6 99.9 E-MEXP-828-raw-cel-1156922872
133.9 99.9 E-MEXP-828-raw-cel-1156922923
127.6 99.9 E-MEXP-828-raw-cel-1156922944
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 0 1883 At1g08100 837328 NRT2.2 (NITRATE TRANSPORTER 2.2) Encodes a high-affinity nitrate transporter. C.G. S.X.
0.42 6e-51 202 At5g60770 836198 ATNRT2.4 member of High affinity nitrate transporter family C.G. S.X.
0.11 2e-7 57 At5g60780 836199 ATNRT2.3 member of High affinity nitrate transporter family C.G. S.X.
0.05 3e-3 44 At1g12940 837852 ATNRT2.5 (nitrate transporter2.5) member of High affinity nitrate transporter family C.G. S.X.
0.11 1e-2 42 At3g45060 823641 ATNRT2.6 member of High affinity nitrate transporter family C.G. S.X.
0.01 3e+0 34 At5g59750 836096 riboflavin biosynthesis protein, putative F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP C.G. S.X.
0.01 3e+0 34 At5g14550 831306 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO C.G. S.X.
0.01 3e+0 34 At5g60250 836147 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFPOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 5e-49 196 Glycine max Gma.8482.1.S1_at AF047718.1 NRT2 protein - 1e-27 At5g60770 ATNRT2.4 C.G. S.X.
0.17 1e-13 77 Hordeum vulgare Contig26512_at Contig26512 - - 2e-13 At1g08090 ATNRT2:1 (NITRATE TRANSPORTER 2:1) C.G. S.X.
0.14 3e-8 61 Oryza sativa Os02g0112600 AK109733.1 - Membrane transporter 2e-8 At1g08090 ATNRT2:1 (NITRATE TRANSPORTER 2:1) C.G. S.X.
0.14 3e-19 97 Populus trichocarpa Ptp.5713.2.S1_a_at AJ557585.1 high affinity nitrate transporter - 7e-6 At5g60770 ATNRT2.4 C.G. S.X.
0.19 6e-8 59 Triticum aestivum Ta.2756.1.S1_at AY053452.1 high-affinity nitrate transporter - 6e-8 At1g08090 ATNRT2:1 (NITRATE TRANSPORTER 2:1) C.G. S.X.
0.01 4e+0 32 Vitis vinifera 1621163_at BQ799269 hypothetical protein LOC100253488 - 1e-6 At5g58490 cinnamoyl-CoA reductase family C.G. S.X.
0.10 9e-5 48 Zea mays Zm.10344.1.S1_at AY129953.1 nrt2.1 protein - 2e-4 At1g08090 ATNRT2:1 (NITRATE TRANSPORTER 2:1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010167 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus.
X GO:0015706 The directed movement of nitrate into, out of, within or between cells.
X GO:0048527 The process whose specific outcome is the progression of the lateral root over time, from its formation to the mature structure. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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