Gene omics information

Query gene ID At1g08070
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g08070837325pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBS.X.H.G.
0.4457.2At3g62890825464bindingF:binding;P:biological_process unknown;C:cellular_component unknown;POMFBS.X.H.G.
0.3338.1At1g09810837511ECT11 (evolutionarily conserved C-terminal region 11)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.2014.4At1g03687839052-F:molecular_function unknown;P:biological_process unknown;C:unknown;BOPS.X.H.G.
0.061.4At1g04790839412zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVS.X.H.G.
0.030.6At4g11970826804YT521-B-like family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
192.1100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
175.4100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
175.0100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
154.599.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
145.399.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
143.399.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
142.899.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
137.499.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
129.399.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
128.699.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.017e-550At5g55740835668CRR21 (chlororespiratory reduction 21)Encodes a member of the E+ subgroup of the PPR protein family, containing the E and E+ motifs following a tandem array of PPR motifs. It also contains an unknown motif consisting of 15 aa, which is highly conserved in some PPR proteins, including CRR4. CRR21 is involved in RNA editing of the site 2 of ndhD (ndhD-2),which encodes a subunit of the NDH complex. The RNA editing changes aa 128 from Ser to Leu. Mutants have impaired NDH complex activity.C.G.S.X.
0.013e-448At4g14850827142LOI1 (lovastatin insensitive 1)Encodes a pentatricopeptide (PPR) protein that binds single-stranded RNA. The N-terminal portion of the protein can localize to the mitochondria. Mutations in this gene make plants less sensitive to inhibitors of the MEP and MVA pathways of isoprenoid biosynthesis and increase the activity of HMG CoA reductase.C.G.S.X.
0.023e-448At3g22690821840pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:regulation of chlorophyll biosynthetic process, photosystem II assembly, photosystem I assembly, thylakoid membrane organization, RNA modification;C:chloroplast;POMFBAC.G.S.X.
0.023e-448At3g05240819688pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POFMBC.G.S.X.
0.013e-448At2g01510814680pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.011e-346At4g18750827609DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4)Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.C.G.S.X.
0.021e-346At3g16610820912pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.041e-346At3g08820820029pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.031e-346At1g20230838612pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.024e-138Glycine maxGmaAffx.44155.1.S1_atAW757000--3e-3At1g31430pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.021e-138Hordeum vulgareContig23940_atContig23940--5e-1At4g16835pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.034e-552Oryza sativaOs03g0807400AK065345.1-Calreticulin/calnexin family protein5e-16At1g56340CRT1 (CALRETICULIN 1)C.G.S.X.
0.147e-963Populus trichocarpaPtpAffx.214138.1.S1_atpmrna27511hypothetical protein-5e-9At1g08070pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.022e-242Triticum aestivumTaAffx.114037.1.S1_atCA599780--7e-2At1g69160unknown proteinC.G.S.X.
0.023e-136Vitis vinifera1621545_atCB977883hypothetical protein LOC100266544-6e-5At5g13270pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.021e-138Zea maysZm.15449.1.A1_atCA403172--3e-2At1g56690pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage