Gene omics information

Query gene ID At1g07970
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g07970837312unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOBS.X.H.G.
1.00100.0At1g15080838072LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals.S.X.H.G.
1.00100.0At1g49530841377GGPS6 (geranylgeranyl pyrophosphate synthase 6)encodes a mitochondria-targeted geranylgeranyl pyrophosphate synthaseS.X.H.G.
1.00100.0At2g38880818472NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.S.X.H.G.
1.00100.0At4g24700828572unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9797.6At3g62330825406zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVS.X.H.G.
0.9797.6At4g01570828133pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBAS.X.H.G.
0.9797.6At2g21195816656unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PS.X.H.G.
0.9797.6At4g19400827681actin bindingF:actin binding;P:cytoskeleton organization;C:actin cytoskeleton;POS.X.H.G.
0.9797.6At5g18570831975GTP1/OBG family proteinF:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPVS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
2889.4100.0GSM133757Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.799.6GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.399.2GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
8.198.9GSM242955Steroid day 1 (day1D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-654At1g72310843563ATL3Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3).C.G.S.X.
0.017e-550At1g74720843811C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPFBVAC.G.S.X.
0.013e-448At3g06130819786heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVAC.G.S.X.
0.011e-346At4g32760829412protein transporterF:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, plasma membrane;MOFPBVAC.G.S.X.
0.011e-346At4g32551829390LUG (LEUNIG)LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.C.G.S.X.
0.021e-346At3g26790822293FUS3 (FUSCA 3)Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed.C.G.S.X.
0.021e-346At2g45810819189DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;OMBFPAVC.G.S.X.
0.024e-344At5g17830831651unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.107e-1583Glycine maxGmaAffx.29906.1.S1_atBI973640--1e-15At1g07970unknown proteinC.G.S.X.
0.061e-1067Hordeum vulgareContig15064_atContig15064--1e-10At1g07970unknown proteinC.G.S.X.
0.082e-346Oryza sativaOs03g0288800AK072700.1-Hypothetical protein1e-3At1g07970unknown proteinC.G.S.X.
0.112e-656Populus trichocarpaPtpAffx.7295.1.S1_atCV270657hypothetical protein-5e-7At1g07970unknown proteinC.G.S.X.
0.042e-861Triticum aestivumTa.7322.1.S1_atCK209458--8e-9At1g07970unknown proteinC.G.S.X.
0.022e-550Vitis vinifera1614311_atCF516097hypothetical protein LOC100264243-2e-6At1g15780unknown proteinC.G.S.X.
0.095e-446Zea maysZm.17523.1.A1_atCK144759hypothetical protein LOC100279033-8e-4At1g07970unknown proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage