CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g07700

Gene name thioredoxin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At1g07700 837283 thioredoxin family protein F:unknown;P:cell redox homeostasis;C:chloroplast stroma, chloroplast;MPOFBAV S.X. H.G.
0.46 59.8 At1g77930 844128 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV S.X. H.G.
0.29 30.3 At5g61670 836289 - Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons. S.X. H.G.
0.10 3.4 At2g34460 818009 flavin reductase-related F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOPMFA S.X. H.G.
0.10 3.4 At1g68660 843196 - F:molecular_function unknown;P:protein catabolic process;C:unknown;BOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.0 99.2 GSM269818 C2 leaf-well watered-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
10.8 99.2 E-MEXP-1443-raw-cel-1581869632
9.6 99.1 GSM244458 Arabidopsis AtMYB30-as_90-105 min_ Xanthomonas inoculated_biological rep1_exp3 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
9.2 99.1 GSM269828 WT leaf-well watered-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
8.9 99.0 GSM269824 T8 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
8.5 99.0 E-MEXP-1443-raw-cel-1581869688
8.4 99.0 GSM269822 T6 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
8.3 99.0 GSM244456 Arabidopsis wild-type_90-105 min_ Xanthomonas inoculated_biological rep1_exp3 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
8.2 99.0 GSM244459 Arabidopsis AtMYB30-as_90-105 min_ Xanthomonas inoculated_biological rep2_exp4 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
8.1 98.9 E-MEXP-1443-raw-cel-1581869515
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 8e-5 48 At1g07705 837284 transcription regulator F:transcription regulator activity;P:regulation of transcription;C:nucleus, chloroplast;MOBFPV C.G. S.X.
0.02 3e-1 36 At4g36730 829826 GBF1 member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box C.G. S.X.
0.02 1e+0 34 At5g35230 833477 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO C.G. S.X.
0.01 1e+0 34 At5g57160 835822 ATLIG4 Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV. Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration. Interacts with the Arabidopsis homologue of XRCC4. C.G. S.X.
0.02 1e+0 34 At1g52880 841721 NAM (NO APICAL MERISTEM) Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 8e-15 81 Glycine max GmaAffx.47829.1.A1_at CD418668 - - 3e-15 At1g07700 thioredoxin family protein C.G. S.X.
0.07 9e+0 30 Hordeum vulgare Contig13608_at Contig13608 - - 1e-1 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.04 4e-2 40 Oryza sativa Os10g0334500 NM_195796.1 - Conserved hypothetical protein 2e-2 At1g07700 thioredoxin family protein C.G. S.X.
0.25 9e-30 131 Populus trichocarpa Ptp.6951.1.S1_at CV275732 - - 1e-29 At1g07700 thioredoxin family protein C.G. S.X.
0.05 2e-2 40 Triticum aestivum TaAffx.115165.1.S1_at CA486591 - - 5e-1 At2g35850 unknown protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1609731_at CA815182 - - 2e-1 At2g22426 unknown protein C.G. S.X.
0.03 8e+0 30 Zea mays ZmAffx.33.1.A1_at AI657429 t-snare - 2e-1 At4g00890 proline-rich family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0045454 Any process that maintains the redox environment of a cell or compartment within a cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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