CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g07570

Gene name APK1A

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g07570 837271 APK1A Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues S.X. H.G.
0.22 17.5 At1g03590 839447 catalytic/ protein serine/threonine phosphatase F:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:plasma membrane;PMOFV S.X. H.G.
0.03 0.6 At4g26610 828768 D6PKL1 (D6 PROTEIN KINASE LIKE 1) F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA S.X. H.G.
0.02 0.4 At1g67230 843043 LINC1 (LITTLE NUCLEI1) Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. S.X. H.G.
0.02 0.4 At1g35510 840444 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.02 0.4 At4g28760 828997 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
119.7 99.9 E-MEXP-1443-raw-cel-1581869515
37.8 99.8 GSM10477 lec1-1 24-Hr Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
24.9 99.6 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.8 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.4 99.6 E-MEXP-1443-raw-cel-1581869573
23.1 99.6 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.3 99.6 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.0 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.9 99.6 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.6 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.68 0 670 At2g28930 817442 APK1B F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.22 1e-11 71 At5g02290 831880 NAK Encodes a candidate protein kinase NAK that is similar to the oncogenes met and abl. C.G. S.X.
0.16 3e-9 63 At1g69790 843315 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA C.G. S.X.
0.08 3e-9 63 At1g74490 843790 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.05 1e-8 61 At5g01020 831918 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 5e-27 123 Glycine max Gma.3111.2.S1_a_at BQ740743 - - 5e-27 At1g07570 APK1A C.G. S.X.
0.22 5e-43 174 Hordeum vulgare Contig6247_at Contig6247 - - 1e-42 At1g07570 APK1A C.G. S.X.
0.33 3e-38 161 Oryza sativa Os03g0821900 AK070847.1 - Protein kinase domain containing protein 3e-38 At1g07570 APK1A C.G. S.X.
0.21 2e-20 101 Populus trichocarpa PtpAffx.24776.2.A1_a_at CV269543 hypothetical protein - 7e-21 At1g07570 APK1A C.G. S.X.
0.23 5e-14 79 Triticum aestivum Ta.3054.2.S1_at CK206963 - - 4e-14 At1g07570 APK1A C.G. S.X.
0.10 1e-11 69 Vitis vinifera 1607675_at CD011506 hypothetical protein LOC100253466 - 3e-11 At1g07570 APK1A C.G. S.X.
0.20 3e-13 75 Zea mays Zm.13719.1.A1_at AY106357.1 protein kinase APK1A - 1e-12 At1g07570 APK1A C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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