Gene omics information

Query gene ID At1g07520
Gene name scarecrow transcription factor family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At1g07520837266scarecrow transcription factor family proteinF:transcription factor activity;P:response to chitin;C:cellular_component unknown;PBOMS.X.H.G.
0.4862.5At3g09410820100pectinacetylesterase family proteinF:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOBS.X.H.G.
0.4659.8At3g53810824548lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.4457.2At4g04960825837lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.4253.9At5g41100834112-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFPBVAS.X.H.G.
0.3235.7At4g01090827898extra-large G-protein-relatedF:unknown;P:unknown;C:unknown;MPFOBVS.X.H.G.
0.2522.6At1g11050837646protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
231.6100.0GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
159.799.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
131.799.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
119.799.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
108.599.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
106.499.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
102.299.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
101.499.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
98.399.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
97.599.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.235e-24113At2g29060817454scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBOC.G.S.X.
0.021e-346At2g37650818342scarecrow-like transcription factor 9 (SCL9)F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBMOC.G.S.X.
0.044e-344At1g07530837267SCL14 (SCARECROW-LIKE 14)Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm.C.G.S.X.
0.013e-138At5g02310830916PRT6 (PROTEOLYSIS 6)Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.C.G.S.X.
0.013e-138At3g06080819781unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.013e-138At2g42190818819unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e-138Glycine maxGmaAffx.81793.1.S1_atBM188266--1e-1At1g07520scarecrow transcription factor family proteinC.G.S.X.
0.023e-240Hordeum vulgareContig9430_atContig9430--2e-5At2g37650scarecrow-like transcription factor 9 (SCL9)C.G.S.X.
0.035e-448Oryza sativaOs03g0690600AK101402.1-SCARECROW-like protein3e-2At2g37650scarecrow-like transcription factor 9 (SCL9)C.G.S.X.
0.054e-448Populus trichocarpaPtpAffx.200785.1.S1_s_atpmrna1516GRAS family transcription factor-3e-22At1g07530SCL14 (SCARECROW-LIKE 14)C.G.S.X.
0.021e-346Triticum aestivumTa.19128.1.S1_a_atBJ263477--2e-1At3g46600scarecrow transcription factor family proteinC.G.S.X.
0.032e-240Vitis vinifera1613611_atCF209351hypothetical protein LOC100252795-1e-11At2g37650scarecrow-like transcription factor 9 (SCL9)C.G.S.X.
0.022e-344Zea maysZm.4391.1.S1_atCK786802hypothetical protein LOC100194157-3e-2At3g46600scarecrow transcription factor family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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