CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g07430

Gene name protein phosphatase 2C, putative / PP2C, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At1g07430 837255 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV S.X. H.G.
0.82 90.9 At1g56600 842114 AtGolS2 (Arabidopsis thaliana galactinol synthase 2) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO S.X. H.G.
0.76 87.4 At1g66390 842957 MYB90 (MYB DOMAIN PROTEIN 90) production of anthocyanin pigment 2 protein (PAP2) S.X. H.G.
0.67 81.6 At3g57680 824937 peptidase S41 family protein F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPM S.X. H.G.
0.64 78.9 At1g57590 842135 carboxylesterase F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB S.X. H.G.
0.64 78.9 At5g15190 831371 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.56 73.0 At5g19460 832066 atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20) F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMP S.X. H.G.
0.50 65.3 At2g41190 818718 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPOFBAV S.X. H.G.
0.35 41.6 At2g25625 817103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
368.6 100.0 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
213.2 100.0 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
203.2 100.0 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
201.2 100.0 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
197.4 100.0 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
191.7 100.0 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
148.2 99.9 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
146.1 99.9 GSM131330 AtGen_6-3622_Saltstress-Roots-24.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
145.7 99.9 GSM131300 AtGen_6-2512_Osmoticstress-Shoots-12.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
137.0 99.9 GSM269831 T6 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 2e-35 151 At2g29380 817487 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV C.G. S.X.
0.17 5e-17 89 At5g59220 836040 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation, response to abscisic acid stimulus;C:chloroplast;MPOFBV C.G. S.X.
0.07 2e-10 67 At3g11410 820314 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA. C.G. S.X.
0.04 4e-5 50 At4g26080 828714 ABI1 (ABA INSENSITIVE 1) Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure. C.G. S.X.
0.02 2e-4 48 At5g57050 835809 ABI2 (ABA INSENSITIVE 2) Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo. C.G. S.X.
0.02 2e-1 38 At5g27580 832818 AGL89 F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;P C.G. S.X.
0.02 2e-1 38 At3g60490 825220 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.01 2e-1 38 At1g72790 843610 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MPFOBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 3e-10 67 Glycine max GmaAffx.52826.3.S1_at BF596503 - - 2e-8 At3g11410 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) C.G. S.X.
0.02 3e-1 36 Hordeum vulgare HVSMEh0099O01f_s_at HVSMEh0099O01f - - 3e+0 At3g53670 unknown protein C.G. S.X.
0.08 3e-7 57 Oryza sativa Os05g0457200 9633.m03549 - Protein phosphatase-2C 2e-7 At1g07430 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.15 3e-13 77 Populus trichocarpa Ptp.868.1.S1_s_at CK089985 hypothetical protein - 7e-47 At3g11410 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.114559.1.S1_x_at CA501495 - - 1e+0 At2g35640 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.08 2e-7 56 Vitis vinifera 1608189_s_at BQ800538 hypothetical protein LOC100247958 - 1e-21 At3g11410 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) C.G. S.X.
0.02 3e-1 36 Zea mays Zm.12462.1.A1_at AW066887 hypothetical protein LOC100277431 - 8e-1 At5g45630 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006470 The process of removing one or more phosphoric residues from a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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