CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g07410

Gene name ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.92 96.0 At1g07410 837253 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) F:protein binding, GTP binding, GTPase activity;P:intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction;C:endosome, plasma membrane, cell plate;MOFPBAV S.X. H.G.
0.67 81.6 At1g22730 838879 MA3 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.63 78.1 At5g02720 831821 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At3g51470 824310 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA S.X. H.G.
0.50 65.3 At2g01330 814661 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA S.X. H.G.
0.44 57.2 At1g08730 837394 XIC Class XI myosin gene S.X. H.G.
0.26 24.4 At3g03080 821128 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOFMPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
399.9 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
194.5 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
119.5 99.9 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
113.9 99.9 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
96.6 99.9 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
90.9 99.9 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
89.4 99.9 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
73.3 99.9 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
66.2 99.8 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
66.0 99.8 GSM142665 NE001_ATH1_A3-Evans-w40 GSE6154 Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 4e-62 238 At5g59150 836033 ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endosome, plasma membrane, cell plate;MOFPBVA C.G. S.X.
0.69 7e-61 234 At3g46830 823836 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endosome, plasma membrane, cell plate;MOFPBAV C.G. S.X.
0.26 4e-22 105 At3g15060 820735 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) F:GTP binding;P:response to cadmium ion;C:unknown;MOFPBAV C.G. S.X.
0.30 4e-19 95 At4g18800 827614 ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA C.G. S.X.
0.17 6e-18 91 At4g08190 826369 Ras-related GTP-binding protein, putative F:GTP binding;P:small GTPase mediated signal transduction;C:cellular_component unknown;MPOF C.G. S.X.
0.24 6e-18 91 At1g06400 837151 ARA-2 small GTP-binding protein (ara-2) C.G. S.X.
0.12 1e-16 87 At5g45750 834614 AtRABA1c (Arabidopsis Rab GTPase homolog A1c) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, nucleus, vacuole;MOFPBAV C.G. S.X.
0.20 2e-15 83 At1g16920 838263 ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking. C.G. S.X.
0.22 1e-12 73 At5g60860 836207 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 3e-51 202 Glycine max Gma.14624.1.S1_at AI496259 - - 7e-50 At5g59150 ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) C.G. S.X.
0.36 1e-45 182 Hordeum vulgare Contig3170_at Contig3170 - - 4e-45 At1g07410 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) C.G. S.X.
0.38 1e-42 174 Oryza sativa Os03g0823700 AK061336.1 - Ras-related protein Rab11C 1e-42 At1g07410 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) C.G. S.X.
0.46 4e-32 139 Populus trichocarpa PtpAffx.209315.1.S1_at pmrna18408 hypothetical protein - 2e-36 At3g46830 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) C.G. S.X.
0.33 1e-43 176 Triticum aestivum Ta.15964.1.S1_at CA502550 - - 3e-43 At1g07410 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) C.G. S.X.
0.24 3e-17 87 Vitis vinifera 1609123_at CF215118 hypothetical protein LOC100259150 - 2e-55 At1g09630 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) C.G. S.X.
0.31 1e-41 169 Zea mays Zm.17108.1.S1_at CF972407 hypothetical protein LOC100216670 - 8e-31 At3g46830 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
L GO:0006913 The directed movement of molecules between the nucleus and the cytoplasm.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
L GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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