Gene omics information

Query gene ID At1g07370
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At1g07370837249PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation.S.X.H.G.
0.5673.0At2g29570817506PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2)Functionally interacts with POLH to repair DNA damaged by UVB damage.S.X.H.G.
0.5065.3At2g21790816715RNR1 (RIBONUCLEOTIDE REDUCTASE 1)encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repairS.X.H.G.
0.5065.3At2g24490816985RPA2 (REPLICON PROTEIN A2)Encodes a component of Replication Protein A. Component of transcriptional gene silencing which does not affect endogenous small RNA accumulation nor DNA methylation. Localized in the nucleus. Involved in DNA repair. Interacts physically with ROS1.S.X.H.G.
0.5065.3At5g61000836221replication protein, putativeF:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFAS.X.H.G.
0.5065.3At5g65360836661histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOS.X.H.G.
0.3541.6At3g20670821614HTA13Encodes HTA13, a histone H2A protein.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
22.499.6GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
20.199.6GSM242955Steroid day 1 (day1D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.810674At2g29570817506PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2)Functionally interacts with POLH to repair DNA damaged by UVB damage.C.G.S.X.
0.011e-138At5g45200834556disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAC.G.S.X.
0.021e-138At5g62020836322AT-HSFB2Amember of Heat Stress Transcription Factor (Hsf) familyC.G.S.X.
0.021e-138At3g20015821540aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOC.G.S.X.
0.021e-138At2g26600817201glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;POFC.G.S.X.
0.021e-138At1g71120843452GLIP6Contains lipase signature motif and GDSL domain.C.G.S.X.
0.014e-136At5g06110830498DNAJ heat shock N-terminal domain-containing protein / cell division protein-relatedF:heat shock protein binding, DNA binding;P:protein folding;C:unknown;MOBFPVAC.G.S.X.
0.014e-136At3g24240822011leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.024e-136At3g17410821005serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.582e-56220Glycine maxGma.431.1.S1_atCD390728proliferating cell nuclear antigen-2e-56At1g07370PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)C.G.S.X.
0.452e-35149Hordeum vulgareContig6099_atContig6099--6e-35At1g07370PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)C.G.S.X.
0.473e-31137Oryza sativaOs.3376.1.S1_at---0C.G.S.X.
0.585e-60232Populus trichocarpaPtp.6624.1.S1_atCV253392hypothetical protein-5e-60At1g07370PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)C.G.S.X.
0.317e-1271Triticum aestivumTa.2876.2.A1_atCK213813--6e-12At1g07370PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)C.G.S.X.
0.202e-1891Vitis vinifera1610854_atBQ797704hypothetical protein LOC100248466-4e-18At1g07370PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)C.G.S.X.
0.523e-37155Zea maysZm.531.1.S1_atU87949.1proliferating cell nuclear antigen2-9e-37At1g07370PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0051726Any process that modulates the rate or extent of progression through the cell cycle.
CGO:0006275Any process that modulates the frequency, rate or extent of DNA replication.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

03030Link to KEGG PATHWAYDNA replication
03410Link to KEGG PATHWAYBase excision repair
03420Link to KEGG PATHWAYNucleotide excision repair
03430Link to KEGG PATHWAYMismatch repair
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