Gene omics information

Query gene ID At1g07320
Gene name RPL4
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5368.6At1g07320837243RPL4encodes a plastid ribosomal protein L4S.X.H.G.
0.8693.1At1g74970843836RPS9 (RIBOSOMAL PROTEIN S9)ribosomal protein S9, nuclear encoded component of the chloroplast ribosomeS.X.H.G.
0.8693.1At3g15190820750chloroplast 30S ribosomal protein S20, putativeF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane;BOPMS.X.H.G.
0.5065.3At1g78630844199emb1473 (embryo defective 1473)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAPS.X.H.G.
0.3541.6At2g3345081791050S ribosomal protein L28, chloroplast (CL28)F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast, membrane;BOPFS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.498.3GSM131502ATGE_10_BGSE5630AtGenExpress: Developmental series (leaves)
5.298.2GSM318331EL_14DAS_2GSE12676Arabidopsis thaliana Ler developmental series
4.898.0GSM317624Apex_14DAS_2GSE12676Arabidopsis thaliana Ler developmental series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-344At5g13390831180NEF1 (NO EXINE FORMATION 1)Required for normal pollen development and lipid accumulation within the tapetumC.G.S.X.
0.032e-344At5g19260832046unknown proteinF:unknown;P:unknown;C:unknown;MOFPBVC.G.S.X.
0.042e-344At3g51880824351HMGB1 (HIGH MOBILITY GROUP B 1)Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.064e-550Glycine maxGma.16428.1.S1_atCD415062--3e-5At1g07320RPL4C.G.S.X.
0.033e+032Hordeum vulgareContig25645_atContig25645--7e-2At3g50550unknown proteinC.G.S.X.
0.035e-240Oryza sativaOsAffx.21445.3.S1_x_at---0C.G.S.X.
0.155e-1789Populus trichocarpaPtpAffx.17302.1.S1_atBP931015hypothetical protein-5e-17At1g07320RPL4C.G.S.X.
0.044e-136Triticum aestivumTaAffx.30499.1.S1_atCA624792--4e+0At5g14010zinc finger (C2H2 type) family proteinC.G.S.X.
0.035e-134Vitis vinifera1609341_s_atCF202467.1hypothetical protein LOC100265359-2e-3At5g40630ubiquitin family proteinC.G.S.X.
0.033e+032Zea maysZmAffx.451.1.A1_atAI677139--8e-1At5g66740unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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