CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g07290

Gene name nucleotide-sugar transmembrane transporter

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g07290 837240 nucleotide-sugar transmembrane transporter F:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.94 96.7 At1g10530 837594 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P S.X. H.G.
0.92 96.0 At1g44318 841025 hemb2 F:porphobilinogen synthase activity, catalytic activity, metal ion binding;P:porphyrin biosynthetic process;C:unknown;OBMFAP S.X. H.G.
0.91 95.6 At2g21610 816699 pectinesterase family protein F:pectinesterase activity;P:N-terminal protein myristoylation, cell wall modification;C:cell wall, plant-type cell wall;PBFAMO S.X. H.G.
0.91 95.6 At5g51470 835221 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF S.X. H.G.
0.90 95.1 At1g23160 838924 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:unknown;OPBMF S.X. H.G.
0.90 95.1 At1g65570 842868 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA S.X. H.G.
0.89 94.6 At4g26880 828795 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM S.X. H.G.
0.88 94.0 At4g19460 827687 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMF S.X. H.G.
0.86 93.1 At1g21340 838733 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
512.4 100.0 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
456.6 100.0 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
447.3 100.0 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
385.7 100.0 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
337.9 100.0 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
337.2 100.0 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
262.8 100.0 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
125.7 99.9 GSM184840 Arabidopsis, root, longitudinal zone 1, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
119.4 99.9 GSM133975 Birnbaum_1-5_StageI-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
106.1 99.9 GSM184839 Arabidopsis, root, longitudinal zone 1, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 9e-6 52 At2g13650 815850 GONST1 (Golgi Nucleotide Sugar Transporter 1) GDP-mannose transporter C.G. S.X.
0.01 1e-1 38 At3g06880 819873 nucleotide binding F:nucleotide binding;P:unknown;C:cellular_component unknown;MFBOPA C.G. S.X.
0.03 5e-1 36 At5g15948 6240908 CPuORF10 (Conserved peptide upstream open reading frame 10) Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF10 represents a conserved upstream opening reading frame relative to major ORF AT5G15950.1 C.G. S.X.
0.03 5e-1 36 At5g42380 834244 CML37 (CALMODULIN LIKE 37) F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBV C.G. S.X.
0.03 5e-1 36 At3g02468 6241331 CPuORF9 (Conserved peptide upstream open reading frame 9) Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF9 represents a conserved upstream opening reading frame relative to major ORF AT3G02470.1 C.G. S.X.
0.01 5e-1 36 At1g31440 840034 SH3 domain-containing protein 1 (SH3P1) F:clathrin binding;P:unknown;C:endomembrane system, plasma membrane;MOBPFVA C.G. S.X.
0.02 2e+0 34 Atmg00810 - - hypothetical protein C.G. S.X.
0.01 2e+0 34 At4g02020 828165 SWN (SWINGER) Encodes a polycomb group protein. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max GmaAffx.93554.1.S1_at CF809279 - - 3e-1 At1g04250 AXR3 (AUXIN RESISTANT 3) C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig21858_at Contig21858 - - 3e-1 At2g02050 NADH-ubiquinone oxidoreductase B18 subunit, putative C.G. S.X.
0.09 2e-5 52 Oryza sativa Os03g0826300 9631.m06022 - - 4e-2 At2g13650 GONST1 (Golgi Nucleotide Sugar Transporter 1) C.G. S.X.
0.34 9e-19 95 Populus trichocarpa PtpAffx.204918.1.S1_at pmrna9724 hypothetical protein - 6e-19 At1g07290 nucleotide-sugar transmembrane transporter C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.41081.2.A1_at CA735850 - - 4e-12 At2g13650 GONST1 (Golgi Nucleotide Sugar Transporter 1) C.G. S.X.
0.06 3e-6 52 Vitis vinifera 1609106_at CD006725 - - 6e-6 At1g07290 nucleotide-sugar transmembrane transporter C.G. S.X.
0.02 2e-1 36 Zea mays Zm.11925.1.A1_at BM381896 - - 2e-1 At5g52550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0015780 The directed movement of nucleotide-sugars into, out of, within or between cells. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
X GO:0015784 The directed movement of GDP-mannose into, out of, within or between cells. GDP-mannose is a substance composed of mannose in glycosidic linkage with guanosine diphosphate.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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